Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.71□□□□□ -1.49
CCDC9Q9Y3X0 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 RNU6-960P-201ENST00000364056 120 ntBASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 CTSL3P-202ENST00000412179 788 ntBASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 AC091286.1-201ENST00000431233 461 ntBASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 MTND3P21-201ENST00000433774 331 ntBASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 RPS20P5-201ENST00000434808 360 ntBASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 BTF3P6-201ENST00000448054 499 ntBASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 PSPHP1-201ENST00000450062 261 ntBASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 AL592156.1-201ENST00000508758 304 ntBASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 AC117522.1-201ENST00000509821 380 ntBASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 PTS-202ENST00000524931 696 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 OR4R1P-201ENST00000529879 463 ntBASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 RPS3AP4-201ENST00000555161 764 ntBASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 NCAPGP2-201ENST00000557911 754 ntBASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 AC037471.2-201ENST00000564941 598 ntBASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 DPPA3P3-201ENST00000603842 430 ntBASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 AL137003.2-201ENST00000606924 2538 ntBASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC9Q9Y3X0 MAPK10-286ENST00000641208 8747 ntBASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 AL672167.1-204ENST00000641875 3017 ntBASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 MIR634-201ENST00000385208 97 ntBASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 RNU6-648P-201ENST00000410190 107 ntBASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 AC007738.1-201ENST00000413892 348 ntBASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 HMGB1P27-201ENST00000431429 603 ntBASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 NOTCH2P1-201ENST00000443481 624 ntBASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 MTATP6P30-201ENST00000443540 664 ntBASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 AF213884.1-201ENST00000488102 463 ntBASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 RNU6-314P-201ENST00000516574 104 ntBASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 AC004492.1-201ENST00000607036 742 ntBASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 AL110115.1-201ENST00000614396 364 ntBASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 AL354798.1-201ENST00000622505 329 ntBASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC9Q9Y3X0 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 AF127577.6-201ENST00000623352 2191 ntBASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 RNU6-188P-201ENST00000364207 107 ntBASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 MIR34B-201ENST00000385076 84 ntBASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 MTATP6P18-201ENST00000417994 673 ntBASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 NEFMP1-201ENST00000443423 1006 ntBASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 RPS3AP14-201ENST00000483907 780 ntBASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 AL138721.1-201ENST00000616756 179 ntBASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 SEPT14P19-203ENST00000633205 211 ntBASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 AF117829.1-206ENST00000621883 3802 ntBASIC5.69□□□□□ -1.5
CCDC9Q9Y3X0 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 AC073346.2-201ENST00000624724 2058 ntBASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 AC092435.4-201ENST00000623012 4159 ntBASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 Y_RNA.111-201ENST00000363248 100 ntBASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms