Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
NOD1Q9Y239 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
NOD1Q9Y239 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.7□□□□□ -1.5
NOD1Q9Y239 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
NOD1Q9Y239 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
NOD1Q9Y239 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
NOD1Q9Y239 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
NOD1Q9Y239 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
NOD1Q9Y239 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
NOD1Q9Y239 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.69□□□□□ -1.5
NOD1Q9Y239 AP001284.1-201ENST00000528393 2118 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
NOD1Q9Y239 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.69□□□□□ -1.5
NOD1Q9Y239 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
NOD1Q9Y239 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
NOD1Q9Y239 Y_RNA.106-201ENST00000363189 100 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 RNU6-1249P-201ENST00000363237 111 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
NOD1Q9Y239 RNU6-1026P-201ENST00000384465 108 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 RNU6ATAC23P-201ENST00000408448 123 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 RNU2-3P-201ENST00000410144 191 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 RNU6-712P-201ENST00000410558 100 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 BX842559.1-201ENST00000419615 532 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 AL158071.1-201ENST00000430315 461 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.69□□□□□ -1.5
NOD1Q9Y239 DYNLT3P2-201ENST00000442517 295 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC5.69□□□□□ -1.5
NOD1Q9Y239 RPL34P20-201ENST00000442771 351 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 AL121871.1-201ENST00000443413 436 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 AC091180.1-201ENST00000462104 372 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 AC008571.1-201ENST00000467232 300 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
NOD1Q9Y239 RN7SL319P-201ENST00000480656 221 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 AC018437.1-201ENST00000492214 406 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 AC105758.1-201ENST00000506038 399 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 GLUD1P3-202ENST00000508551 200 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.69□□□□□ -1.5
NOD1Q9Y239 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.69□□□□□ -1.5
NOD1Q9Y239 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC5.69□□□□□ -1.5
NOD1Q9Y239 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC5.69□□□□□ -1.5
NOD1Q9Y239 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.69□□□□□ -1.5
NOD1Q9Y239 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.69□□□□□ -1.5
NOD1Q9Y239 AC084783.1-201ENST00000565846 910 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 MIR5692A1-201ENST00000580523 69 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 AC008814.1-201ENST00000603797 406 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 AL162431.4-201ENST00000604674 411 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 RNU6-85P-201ENST00000605989 107 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 SDAD1P1-202ENST00000524156 2051 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
NOD1Q9Y239 AL031595.2-201ENST00000624215 19071 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
NOD1Q9Y239 THAP12P5-201ENST00000405864 2275 ntBASIC5.69□□□□□ -1.5
NOD1Q9Y239 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.69□□□□□ -1.5
NOD1Q9Y239 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.69□□□□□ -1.5
NOD1Q9Y239 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.69□□□□□ -1.5
NOD1Q9Y239 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
NOD1Q9Y239 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.69□□□□□ -1.5
NOD1Q9Y239 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
NOD1Q9Y239 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
NOD1Q9Y239 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
NOD1Q9Y239 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
NOD1Q9Y239 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
NOD1Q9Y239 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
NOD1Q9Y239 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.68□□□□□ -1.5
NOD1Q9Y239 U3.10-201ENST00000364459 214 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 RNVU1-6-201ENST00000364688 164 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 RPS16P5-201ENST00000406501 404 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 AL356968.1-201ENST00000416622 474 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 SYF2P2-201ENST00000417620 583 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC5.68□□□□□ -1.5
NOD1Q9Y239 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC5.68□□□□□ -1.5
NOD1Q9Y239 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC5.68□□□□□ -1.5
NOD1Q9Y239 RPS15AP10-201ENST00000432472 382 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 AC073063.1-201ENST00000434352 607 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 RPL21P2-201ENST00000440049 481 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 HSFY6P-201ENST00000445573 403 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC5.68□□□□□ -1.5
NOD1Q9Y239 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC5.68□□□□□ -1.5
NOD1Q9Y239 PCMTD1P1-201ENST00000455560 355 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
NOD1Q9Y239 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC5.68□□□□□ -1.5
NOD1Q9Y239 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.68□□□□□ -1.5
NOD1Q9Y239 SNORA31.3-201ENST00000516029 96 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 RNU6-1143P-201ENST00000516125 104 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 AC009643.1-201ENST00000532030 391 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.68□□□□□ -1.5
NOD1Q9Y239 AC126177.3-201ENST00000551839 688 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 RN7SL652P-201ENST00000577769 300 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 MIR4737-201ENST00000583979 81 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 AC234771.5-201ENST00000600161 514 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 Z98751.3-201ENST00000604447 521 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 HMGN2P28-201ENST00000606102 262 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 MIR8062-201ENST00000621515 85 ntBASIC5.68□□□□□ -1.5
NOD1Q9Y239 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
NOD1Q9Y239 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.68□□□□□ -1.5
NOD1Q9Y239 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
NOD1Q9Y239 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
NOD1Q9Y239 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
NOD1Q9Y239 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
NOD1Q9Y239 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms