Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 AC234775.1-201ENST00000454247 670 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 ARL4AP2-201ENST00000507378 601 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 ARL2BPP6-201ENST00000512757 439 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 RNA5SP337-201ENST00000517007 109 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 AP000857.1-201ENST00000532151 543 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 OR4T1P-201ENST00000554933 911 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 RPS3AP4-201ENST00000555161 764 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 AL158211.4-201ENST00000606988 584 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 U6.42-201ENST00000618440 107 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 MIR6500-201ENST00000622700 86 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 RNU6-223P-201ENST00000362830 107 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 RNU6-282P-201ENST00000365357 103 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 RNY3P13-201ENST00000365542 102 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 RNU6-108P-201ENST00000365558 107 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 RNU6-637P-201ENST00000384050 107 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 RNU6-213P-201ENST00000384051 104 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 U1.1-201ENST00000384101 164 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 Y_RNA.453-201ENST00000384223 109 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 MIR141-201ENST00000384975 95 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 RNU6-754P-201ENST00000391166 107 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 FAR2P4-202ENST00000425399 584 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 MTCO2P19-201ENST00000427513 598 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 AL121871.1-201ENST00000443413 436 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 AC079781.2-201ENST00000446424 169 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 MTND4P18-201ENST00000447010 465 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 AC010655.1-201ENST00000449336 292 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 AC006480.1-201ENST00000449887 378 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 AC022364.2-201ENST00000457963 554 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 AC026979.1-201ENST00000492525 396 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 RPL7P23-201ENST00000493874 747 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 AC093278.1-201ENST00000494700 600 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 PRDX4P1-201ENST00000507189 574 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 RNU6-1095P-201ENST00000516148 108 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 AC022616.3-201ENST00000523940 148 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 AC120057.2-201ENST00000571520 271 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 AC006504.3-201ENST00000586818 523 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 BNIP3P33-201ENST00000598912 569 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 AL603758.1-201ENST00000618654 241 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 AC006065.5-201ENST00000623427 349 ntBASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
LIMCH1Q9UPQ0 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 RNU6-169P-201ENST00000365336 107 ntBASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 AC022028.1-201ENST00000412054 408 ntBASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 GPR143P-201ENST00000434155 205 ntBASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 RPL21P89-201ENST00000444021 467 ntBASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 RN7SKP122-201ENST00000515923 296 ntBASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 RNA5SP164-201ENST00000516533 110 ntBASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 RNU6-798P-201ENST00000516912 103 ntBASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 AC022695.1-201ENST00000522089 237 ntBASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 AC008489.1-201ENST00000524271 483 ntBASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 AL121576.1-201ENST00000556055 276 ntBASIC4.44□□□□□ -1.7
LIMCH1Q9UPQ0 SUB1P2-201ENST00000556401 297 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms