Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC4.19□□□□□ -1.74
DKK3Q9UBP4 AC005921.1-201ENST00000510589 286 ntBASIC4.19□□□□□ -1.74
DKK3Q9UBP4 NPM1P41-201ENST00000512920 831 ntBASIC4.19□□□□□ -1.74
DKK3Q9UBP4 AC016065.2-201ENST00000514530 444 ntBASIC4.19□□□□□ -1.74
DKK3Q9UBP4 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.19□□□□□ -1.74
DKK3Q9UBP4 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.19□□□□□ -1.74
DKK3Q9UBP4 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC4.19□□□□□ -1.74
DKK3Q9UBP4 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.19□□□□□ -1.74
DKK3Q9UBP4 OR8L1P-201ENST00000534005 955 ntBASIC4.19□□□□□ -1.74
DKK3Q9UBP4 AC063950.1-201ENST00000552036 308 ntBASIC4.19□□□□□ -1.74
DKK3Q9UBP4 MEG8-218ENST00000556720 456 ntTSL 3 BASIC4.19□□□□□ -1.74
DKK3Q9UBP4 AL360157.1-201ENST00000565962 87 ntBASIC4.19□□□□□ -1.74
DKK3Q9UBP4 AL356432.3-201ENST00000568952 465 ntBASIC4.19□□□□□ -1.74
DKK3Q9UBP4 MIR5047-201ENST00000579212 100 ntBASIC4.19□□□□□ -1.74
DKK3Q9UBP4 MIR3167-201ENST00000579623 85 ntBASIC4.19□□□□□ -1.74
DKK3Q9UBP4 MIR4444-1-201ENST00000581696 74 ntBASIC4.19□□□□□ -1.74
DKK3Q9UBP4 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.19□□□□□ -1.74
DKK3Q9UBP4 AC005730.3-201ENST00000583067 366 ntBASIC4.19□□□□□ -1.74
DKK3Q9UBP4 MIR4444-2-201ENST00000584390 74 ntBASIC4.19□□□□□ -1.74
DKK3Q9UBP4 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC4.19□□□□□ -1.74
DKK3Q9UBP4 AL355472.4-201ENST00000610233 626 ntBASIC4.19□□□□□ -1.74
DKK3Q9UBP4 AC104260.1-201ENST00000616660 539 ntBASIC4.19□□□□□ -1.74
DKK3Q9UBP4 MIR7151-201ENST00000617477 60 ntBASIC4.19□□□□□ -1.74
DKK3Q9UBP4 MIR7702-201ENST00000621931 59 ntBASIC4.19□□□□□ -1.74
DKK3Q9UBP4 AC091953.2-201ENST00000623979 160 ntBASIC4.19□□□□□ -1.74
DKK3Q9UBP4 AC112484.5-201ENST00000624189 228 ntBASIC4.19□□□□□ -1.74
DKK3Q9UBP4 MIR4496-201ENST00000635896 61 ntBASIC4.19□□□□□ -1.74
DKK3Q9UBP4 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
DKK3Q9UBP4 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
DKK3Q9UBP4 MTND5P3-201ENST00000438536 1800 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 CBX3P1-201ENST00000325243 554 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 MIR423-201ENST00000362201 94 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 RN7SKP280-201ENST00000364196 304 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 RNU6-1322P-201ENST00000364309 107 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 Y_RNA.234-201ENST00000364409 97 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 Y_RNA.333-201ENST00000365274 102 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 RNU1-39P-201ENST00000383897 165 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 RNU6-876P-201ENST00000391295 104 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 SNRPEP10-201ENST00000420249 274 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 ELOCP18-201ENST00000434209 337 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 UBE2V1P7-201ENST00000446395 340 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 RAD23BP3-201ENST00000454157 1152 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 snoU13.8-201ENST00000458890 104 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 MTCO2P29-201ENST00000465212 189 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 RPL36AP51-201ENST00000487216 318 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 AF213884.1-201ENST00000488102 463 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 AC079382.1-201ENST00000493346 557 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 AC010587.1-201ENST00000505809 469 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 AC023141.12-201ENST00000512399 199 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 AC104383.1-201ENST00000530297 370 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 OR5D17P-201ENST00000531492 978 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 CBX3P7-201ENST00000532876 502 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 AC008739.3-201ENST00000603262 127 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 BNIP3P9-201ENST00000603714 553 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 AC055876.5-201ENST00000605667 259 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 AC233309.1-201ENST00000619522 751 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 AC048347.1-201ENST00000624621 427 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 RNA5SP196-201ENST00000625967 102 ntBASIC4.18□□□□□ -1.74
DKK3Q9UBP4 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
DKK3Q9UBP4 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
DKK3Q9UBP4 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.17□□□□□ -1.74
DKK3Q9UBP4 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.17□□□□□ -1.74
DKK3Q9UBP4 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
DKK3Q9UBP4 AC116667.1-201ENST00000604855 2072 ntBASIC4.17□□□□□ -1.74
DKK3Q9UBP4 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
DKK3Q9UBP4 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
DKK3Q9UBP4 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
DKK3Q9UBP4 Y_RNA.11-201ENST00000362375 109 ntBASIC4.17□□□□□ -1.74
DKK3Q9UBP4 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
DKK3Q9UBP4 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
DKK3Q9UBP4 RNU6-1207P-201ENST00000384343 107 ntBASIC4.17□□□□□ -1.74
DKK3Q9UBP4 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
DKK3Q9UBP4 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms