Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 MTND2P19-201ENST00000449129 1012 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AC087879.1-201ENST00000474343 374 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 RPL21P131-201ENST00000497298 483 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AC125611.2-201ENST00000551907 647 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AC104307.1-201ENST00000616142 196 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 AC011460.1-201ENST00000636268 1834 ntBASIC1.79□□□□□ -2.12
SCN3AQ9NY46 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
SCN3AQ9NY46 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
SCN3AQ9NY46 RNU6-1249P-201ENST00000363237 111 ntBASIC1.78□□□□□ -2.12
SCN3AQ9NY46 SNORA51.11-201ENST00000384442 131 ntBASIC1.78□□□□□ -2.12
SCN3AQ9NY46 PRRC2CP1-201ENST00000404428 159 ntBASIC1.78□□□□□ -2.12
SCN3AQ9NY46 RNU6-193P-201ENST00000410977 107 ntBASIC1.78□□□□□ -2.12
SCN3AQ9NY46 TMEM167AP1-201ENST00000423409 219 ntBASIC1.78□□□□□ -2.12
SCN3AQ9NY46 AC096632.1-201ENST00000427395 310 ntBASIC1.78□□□□□ -2.12
SCN3AQ9NY46 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC1.78□□□□□ -2.12
SCN3AQ9NY46 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC1.78□□□□□ -2.12
SCN3AQ9NY46 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC1.78□□□□□ -2.12
SCN3AQ9NY46 RPS29P11-201ENST00000496507 171 ntBASIC1.78□□□□□ -2.12
SCN3AQ9NY46 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.78□□□□□ -2.12
SCN3AQ9NY46 EEF1A1P37-201ENST00000522748 715 ntBASIC1.78□□□□□ -2.12
SCN3AQ9NY46 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC1.78□□□□□ -2.12
SCN3AQ9NY46 AC106791.2-201ENST00000604680 391 ntBASIC1.78□□□□□ -2.12
SCN3AQ9NY46 AC245884.12-201ENST00000615364 59 ntBASIC1.78□□□□□ -2.12
SCN3AQ9NY46 AL109659.3-201ENST00000624985 950 ntBASIC1.78□□□□□ -2.12
SCN3AQ9NY46 AL356118.1-201ENST00000635272 1078 ntBASIC1.78□□□□□ -2.12
SCN3AQ9NY46 MTND5P31-201ENST00000419366 1374 ntBASIC1.78□□□□□ -2.12
SCN3AQ9NY46 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.78□□□□□ -2.12
SCN3AQ9NY46 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.78□□□□□ -2.12
SCN3AQ9NY46 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SCN3AQ9NY46 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.13
SCN3AQ9NY46 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.78□□□□□ -2.13
SCN3AQ9NY46 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC1.78□□□□□ -2.13
SCN3AQ9NY46 RNU4-52P-201ENST00000384209 138 ntBASIC1.78□□□□□ -2.13
SCN3AQ9NY46 MIR627-201ENST00000384979 97 ntBASIC1.78□□□□□ -2.13
SCN3AQ9NY46 SNORA17.3-201ENST00000391159 129 ntBASIC1.78□□□□□ -2.13
SCN3AQ9NY46 RNU6-1197P-201ENST00000391183 107 ntBASIC1.78□□□□□ -2.13
SCN3AQ9NY46 VTA1P1-201ENST00000414044 866 ntBASIC1.78□□□□□ -2.13
SCN3AQ9NY46 SRIP2-201ENST00000428470 166 ntBASIC1.78□□□□□ -2.13
SCN3AQ9NY46 Z85994.2-201ENST00000434327 452 ntBASIC1.78□□□□□ -2.13
SCN3AQ9NY46 RPL7P12-201ENST00000446719 750 ntBASIC1.78□□□□□ -2.13
SCN3AQ9NY46 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC1.78□□□□□ -2.13
SCN3AQ9NY46 AC090255.1-201ENST00000495779 349 ntBASIC1.78□□□□□ -2.13
SCN3AQ9NY46 SUMO1P1-201ENST00000497904 306 ntBASIC1.78□□□□□ -2.13
SCN3AQ9NY46 C1DP5-201ENST00000525775 383 ntBASIC1.78□□□□□ -2.13
SCN3AQ9NY46 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC1.78□□□□□ -2.13
SCN3AQ9NY46 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC1.78□□□□□ -2.13
SCN3AQ9NY46 AC135178.6-201ENST00000605314 398 ntBASIC1.78□□□□□ -2.13
SCN3AQ9NY46 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC1.78□□□□□ -2.13
SCN3AQ9NY46 AP000676.4-201ENST00000624659 623 ntBASIC1.78□□□□□ -2.13
SCN3AQ9NY46 AC068620.4-201ENST00000636730 1182 ntBASIC1.78□□□□□ -2.13
SCN3AQ9NY46 MAPK10-266ENST00000641066 6555 ntBASIC1.77□□□□□ -2.13
SCN3AQ9NY46 LSM1P1-201ENST00000438629 273 ntBASIC1.77□□□□□ -2.13
SCN3AQ9NY46 XKRY2-201ENST00000442362 1093 ntBASIC1.77□□□□□ -2.13
SCN3AQ9NY46 Z96811.1-201ENST00000445880 108 ntBASIC1.77□□□□□ -2.13
SCN3AQ9NY46 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.77□□□□□ -2.13
SCN3AQ9NY46 RAD1P2-201ENST00000446414 663 ntBASIC1.77□□□□□ -2.13
SCN3AQ9NY46 AL021397.1-201ENST00000451806 248 ntBASIC1.77□□□□□ -2.13
SCN3AQ9NY46 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.77□□□□□ -2.13
SCN3AQ9NY46 MTCO1P47-201ENST00000523889 1271 ntBASIC1.77□□□□□ -2.13
SCN3AQ9NY46 MIR5694-201ENST00000581190 76 ntBASIC1.77□□□□□ -2.13
SCN3AQ9NY46 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC1.77□□□□□ -2.13
SCN3AQ9NY46 AC093673.2-201ENST00000609674 331 ntBASIC1.77□□□□□ -2.13
SCN3AQ9NY46 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC1.77□□□□□ -2.13
SCN3AQ9NY46 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
SCN3AQ9NY46 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC1.76□□□□□ -2.13
SCN3AQ9NY46 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SCN3AQ9NY46 MIR583-201ENST00000384846 75 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 TRAPPC2P4-201ENST00000421750 331 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 AL590762.3-201ENST00000436372 640 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC1.76□□□□□ -2.13
SCN3AQ9NY46 SETP11-201ENST00000473027 690 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 OR5BM1P-201ENST00000512021 366 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 AC110588.1-201ENST00000559699 137 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 MTCYBP28-201ENST00000566728 1132 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 MYL12BP1-201ENST00000569826 507 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 MIR5089-201ENST00000580047 84 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 AC124283.4-201ENST00000581815 456 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 OR4G1P-201ENST00000588632 938 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 AC098826.3-201ENST00000603823 466 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 BNIP3P7-201ENST00000605641 516 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC1.76□□□□□ -2.13
SCN3AQ9NY46 VN1R74P-201ENST00000613259 503 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 AC025016.1-201ENST00000616746 682 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 AC095031.1-201ENST00000623685 672 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
SCN3AQ9NY46 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC1.76□□□□□ -2.13
SCN3AQ9NY46 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC1.76□□□□□ -2.13
SCN3AQ9NY46 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SCN3AQ9NY46 RNU2-25P-201ENST00000411041 191 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 UBE2V1P9-201ENST00000414760 368 ntBASIC1.76□□□□□ -2.13
SCN3AQ9NY46 AL512504.1-201ENST00000415494 778 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms