Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 OR4P1P-201ENST00000530808 1136 ntBASIC2.72□□□□□ -1.97
USP42Q9H9J4 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC2.72□□□□□ -1.97
USP42Q9H9J4 OR11H5P-201ENST00000554039 926 ntBASIC2.72□□□□□ -1.97
USP42Q9H9J4 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.72□□□□□ -1.97
USP42Q9H9J4 AC011494.1-201ENST00000596454 237 ntBASIC2.72□□□□□ -1.97
USP42Q9H9J4 AC006329.2-201ENST00000611491 394 ntBASIC2.72□□□□□ -1.97
USP42Q9H9J4 AC073569.3-201ENST00000619055 682 ntBASIC2.72□□□□□ -1.97
USP42Q9H9J4 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.72□□□□□ -1.97
USP42Q9H9J4 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
USP42Q9H9J4 Y_RNA.338-201ENST00000365320 114 ntBASIC2.71□□□□□ -1.98
USP42Q9H9J4 RNA5SP213-201ENST00000391031 106 ntBASIC2.71□□□□□ -1.98
USP42Q9H9J4 ARL2BPP3-201ENST00000421226 480 ntBASIC2.71□□□□□ -1.98
USP42Q9H9J4 PNRC2P1-201ENST00000423940 420 ntBASIC2.71□□□□□ -1.98
USP42Q9H9J4 OFD1P12Y-201ENST00000427963 1207 ntBASIC2.71□□□□□ -1.98
USP42Q9H9J4 OFD1P13Y-201ENST00000431179 1232 ntBASIC2.71□□□□□ -1.98
USP42Q9H9J4 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC2.71□□□□□ -1.98
USP42Q9H9J4 FABP5P3-201ENST00000437960 408 ntBASIC2.71□□□□□ -1.98
USP42Q9H9J4 MTCYBP34-201ENST00000439552 670 ntBASIC2.71□□□□□ -1.98
USP42Q9H9J4 RPL23AP58-201ENST00000440453 469 ntBASIC2.71□□□□□ -1.98
USP42Q9H9J4 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC2.71□□□□□ -1.98
USP42Q9H9J4 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.71□□□□□ -1.98
USP42Q9H9J4 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC2.71□□□□□ -1.98
USP42Q9H9J4 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
USP42Q9H9J4 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
USP42Q9H9J4 MTND5P4-201ENST00000514978 288 ntBASIC2.71□□□□□ -1.98
USP42Q9H9J4 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.71□□□□□ -1.98
USP42Q9H9J4 AC025881.1-201ENST00000518851 512 ntBASIC2.71□□□□□ -1.98
USP42Q9H9J4 OR10V3P-201ENST00000525712 725 ntBASIC2.71□□□□□ -1.98
USP42Q9H9J4 AC004217.3-201ENST00000551552 878 ntBASIC2.71□□□□□ -1.98
USP42Q9H9J4 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
USP42Q9H9J4 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.71□□□□□ -1.98
USP42Q9H9J4 AC009570.1-201ENST00000609599 745 ntBASIC2.71□□□□□ -1.98
USP42Q9H9J4 AC106028.5-201ENST00000610332 395 ntBASIC2.71□□□□□ -1.98
USP42Q9H9J4 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
USP42Q9H9J4 AC006249.1-201ENST00000621223 471 ntBASIC2.71□□□□□ -1.98
USP42Q9H9J4 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.71□□□□□ -1.98
USP42Q9H9J4 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC2.71□□□□□ -1.98
USP42Q9H9J4 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
USP42Q9H9J4 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.7□□□□□ -1.98
USP42Q9H9J4 AC244453.4-201ENST00000419150 388 ntBASIC2.7□□□□□ -1.98
USP42Q9H9J4 AL645638.1-201ENST00000440519 361 ntBASIC2.7□□□□□ -1.98
USP42Q9H9J4 BX248409.1-201ENST00000455497 255 ntBASIC2.7□□□□□ -1.98
USP42Q9H9J4 AC096751.1-202ENST00000502691 1067 ntBASIC2.7□□□□□ -1.98
USP42Q9H9J4 CBX3P3-201ENST00000508108 532 ntBASIC2.7□□□□□ -1.98
USP42Q9H9J4 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.7□□□□□ -1.98
USP42Q9H9J4 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.7□□□□□ -1.98
USP42Q9H9J4 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.7□□□□□ -1.98
USP42Q9H9J4 AC074051.3-201ENST00000570238 358 ntBASIC2.7□□□□□ -1.98
USP42Q9H9J4 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
USP42Q9H9J4 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC2.7□□□□□ -1.98
USP42Q9H9J4 AC091057.2-201ENST00000602594 792 ntBASIC2.7□□□□□ -1.98
USP42Q9H9J4 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC2.7□□□□□ -1.98
USP42Q9H9J4 MIR6076-201ENST00000617521 113 ntBASIC2.7□□□□□ -1.98
USP42Q9H9J4 AP003122.6-201ENST00000623831 495 ntBASIC2.7□□□□□ -1.98
USP42Q9H9J4 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC2.7□□□□□ -1.98
USP42Q9H9J4 AP000676.4-201ENST00000624659 623 ntBASIC2.7□□□□□ -1.98
USP42Q9H9J4 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.7□□□□□ -1.98
USP42Q9H9J4 BX649567.1-201ENST00000642071 1134 ntBASIC2.7□□□□□ -1.98
USP42Q9H9J4 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.7□□□□□ -1.98
USP42Q9H9J4 AC244517.1-201ENST00000606030 2086 ntBASIC2.7□□□□□ -1.98
USP42Q9H9J4 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.7□□□□□ -1.98
USP42Q9H9J4 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
USP42Q9H9J4 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
USP42Q9H9J4 AL512283.1-201ENST00000606756 1384 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 RNU1-17P-201ENST00000363022 152 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 Y_RNA.140-201ENST00000363474 103 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC2.69□□□□□ -1.98
USP42Q9H9J4 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC2.69□□□□□ -1.98
USP42Q9H9J4 MIR649-201ENST00000384843 97 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
USP42Q9H9J4 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.69□□□□□ -1.98
USP42Q9H9J4 MOB4-205ENST00000409916 829 ntTSL 3 BASIC2.69□□□□□ -1.98
USP42Q9H9J4 RNU6-1140P-201ENST00000410517 106 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 ISCA1P6-201ENST00000427740 390 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 MTND4LP14-201ENST00000429447 288 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 MTND4LP7-201ENST00000431728 294 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 AL034418.1-201ENST00000448675 860 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 MTND2P6-201ENST00000455337 1030 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC2.69□□□□□ -1.98
USP42Q9H9J4 RNU4ATAC10P-201ENST00000516967 122 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.69□□□□□ -1.98
USP42Q9H9J4 OR8K4P-201ENST00000534608 872 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.69□□□□□ -1.98
USP42Q9H9J4 AC044913.1-201ENST00000557200 430 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 AC067805.1-201ENST00000559344 470 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 FAM60BP-201ENST00000578364 658 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 AP001004.1-201ENST00000582468 324 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.69□□□□□ -1.98
USP42Q9H9J4 MIR5002-201ENST00000584713 97 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2.69□□□□□ -1.98
USP42Q9H9J4 BX322635.1-201ENST00000605804 496 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 AC016542.1-201ENST00000608259 493 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 AC040168.1-201ENST00000623594 991 ntBASIC2.69□□□□□ -1.98
USP42Q9H9J4 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC2.69□□□□□ -1.98
USP42Q9H9J4 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC2.69□□□□□ -1.98
USP42Q9H9J4 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC2.69□□□□□ -1.98
USP42Q9H9J4 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
USP42Q9H9J4 RNU6-799P-201ENST00000363567 107 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 SNORD51.1-201ENST00000365405 77 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 SNORA48.3-201ENST00000391081 134 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms