Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC4.36□□□□□ -1.71
LRFN3Q9BTN0 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.36□□□□□ -1.71
LRFN3Q9BTN0 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
LRFN3Q9BTN0 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.36□□□□□ -1.71
LRFN3Q9BTN0 LINC00622-201ENST00000562811 1570 ntBASIC4.36□□□□□ -1.71
LRFN3Q9BTN0 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 SNORD56.2-201ENST00000363242 71 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 SNORA20.2-201ENST00000383922 131 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 RNU6-213P-201ENST00000384051 104 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 RNU6-1181P-201ENST00000384191 106 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 Y_RNA.510-201ENST00000384511 114 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 RNU4-6P-201ENST00000410804 122 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 AC007390.1-201ENST00000415722 356 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 MTND3P17-201ENST00000416968 344 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 ZNF90P2-204ENST00000419323 1075 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 RPS15AP12-201ENST00000419498 388 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 USP9YP36-201ENST00000424581 829 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 OR4K11P-201ENST00000431829 904 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 FCF1P1-201ENST00000432690 571 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 AC079448.1-201ENST00000449377 373 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 AC110792.1-201ENST00000491826 472 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 AL049874.2-201ENST00000492636 288 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 AL133271.1-201ENST00000538229 291 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 AL512310.1-201ENST00000548639 172 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 AL359212.1-201ENST00000556608 614 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 SNRPGP15-201ENST00000600149 222 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 AL137843.1-201ENST00000605078 385 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 MIR98-201ENST00000606724 119 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 USP12-203ENST00000620323 349 ntTSL 3 BASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 AC104623.2-202ENST00000623477 4002 ntBASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC4.35□□□□□ -1.71
LRFN3Q9BTN0 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 SCN1A-220ENST00000641603 12506 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 RNU5E-1-201ENST00000362477 120 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 RNY4P16-201ENST00000364768 94 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 U8.11-201ENST00000384699 133 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 U8.12-201ENST00000384701 133 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 RPL21P17-201ENST00000397467 475 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 RPL7P60-201ENST00000397636 735 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 RNU2-43P-201ENST00000410306 190 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 RNU6-195P-201ENST00000411352 109 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 ELOCP4-201ENST00000420090 333 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 AL159987.2-201ENST00000432754 307 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 KCTD9P3-201ENST00000434597 1169 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 AL645939.1-201ENST00000453429 797 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 RPL36AP13-201ENST00000457490 317 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 U8.18-201ENST00000459285 133 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 THAP6-203ENST00000502620 582 ntTSL 3 BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 AL133153.1-201ENST00000557756 303 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 AC010653.1-201ENST00000571108 881 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 OR4K8P-201ENST00000578842 1048 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 BNIP3P10-201ENST00000605360 577 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 AL445363.3-201ENST00000623080 671 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 AC090574.1-201ENST00000623186 233 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 AL645937.1-201ENST00000641739 1652 ntBASIC4.34□□□□□ -1.71
LRFN3Q9BTN0 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.34□□□□□ -1.72
LRFN3Q9BTN0 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.72
LRFN3Q9BTN0 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
LRFN3Q9BTN0 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
LRFN3Q9BTN0 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 RNU6-1227P-201ENST00000383981 107 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms