Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 RNU6-562P-201ENST00000362731 107 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 Y_RNA.148-201ENST00000363557 117 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 RNU6-593P-201ENST00000364716 112 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 MIR135A2-201ENST00000384854 100 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 CISD1P1-201ENST00000393907 327 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 AL391417.1-201ENST00000404100 426 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 RNU4-78P-201ENST00000410940 126 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 RNA5SP111-201ENST00000411386 101 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 RPL7P28-201ENST00000437739 740 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 CYCSP43-201ENST00000438233 310 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 RPL23AP33-201ENST00000442301 452 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 AC104058.1-201ENST00000448028 297 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 RPL23AP56-201ENST00000460778 453 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 RPS17P2-201ENST00000461663 408 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 AL135752.1-201ENST00000479477 471 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 AP001086.1-201ENST00000494882 321 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 AC231760.1-201ENST00000498002 260 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 RNU6-1137P-201ENST00000517073 99 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 AC009902.1-201ENST00000519351 183 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 DYNLL1P4-201ENST00000549314 266 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 AC020910.3-201ENST00000603701 874 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 AL031320.1-201ENST00000604177 357 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 AC087783.2-201ENST00000605070 562 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 Mico1.1-201ENST00000611698 204 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 AC083806.3-201ENST00000614016 455 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 AC007998.5-201ENST00000622938 237 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 AL049641.1-201ENST00000441055 1948 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 AL731566.1-201ENST00000620490 1937 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 SAMMSON-226ENST00000642089 1582 ntBASIC4.61□□□□□ -1.67
PTCHD1Q96NR3 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 RNU6-1040P-201ENST00000383974 107 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 RNU6-393P-201ENST00000384475 107 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 AL357515.1-201ENST00000402967 542 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 AC007738.1-201ENST00000413892 348 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 RPLP0P7-201ENST00000416050 667 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 TBCAP2-201ENST00000416175 326 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 AC099677.1-201ENST00000420575 175 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 AC016712.1-201ENST00000431088 378 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 AC093414.1-201ENST00000434712 514 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 AC006466.1-201ENST00000438721 289 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 AL035666.1-201ENST00000446195 348 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 RNU7-167P-201ENST00000459160 62 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 AC083982.1-201ENST00000485679 344 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 SNORA14.1-201ENST00000516113 141 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 RNU6-390P-201ENST00000516259 103 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 RANP9-201ENST00000519957 271 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 MIR5692C1-201ENST00000585309 91 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 AC004696.1-201ENST00000614345 607 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 AC131238.1-201ENST00000617135 328 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 A2MP1-204ENST00000566278 4130 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 KPNA2P1-201ENST00000458289 1591 ntBASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.6□□□□□ -1.67
PTCHD1Q96NR3 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 131.6 ms