Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 RN7SKP13-201ENST00000515933 244 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AC026403.1-201ENST00000518938 295 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AP005597.4-201ENST00000526762 229 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AL122125.1-201ENST00000616999 600 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AC079684.1-201ENST00000621405 437 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AC134503.1-201ENST00000633048 54 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AL034408.1-202ENST00000636088 415 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 MTND5P3-201ENST00000438536 1800 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 RNA5SP119-201ENST00000362715 117 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 RNY4P16-201ENST00000364768 94 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 RNU6-738P-201ENST00000384531 106 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 AC004987.3-201ENST00000413879 771 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 AC127526.1-201ENST00000417526 366 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 AL139247.1-201ENST00000422768 325 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 HMGB1P18-201ENST00000438801 619 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 AC006480.1-201ENST00000449887 378 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 RPS20P21-201ENST00000466859 343 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 AL163973.1-201ENST00000484753 577 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 AC018797.3-201ENST00000513388 1241 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 RNU6-410P-201ENST00000517006 107 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 RNU6-1314P-201ENST00000517139 104 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 SUB1P1-201ENST00000524415 382 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 AP000907.2-201ENST00000530827 353 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 CYCSP30-201ENST00000546447 172 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 BNIP3P6-201ENST00000549284 499 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 MIR3944-201ENST00000581277 108 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 AC006272.2-201ENST00000594725 163 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 AC244505.7-201ENST00000599675 272 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 AC116312.1-201ENST00000606841 314 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 AC012314.7-201ENST00000619693 93 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 TEX41-265ENST00000627785 704 ntTSL 5 BASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 ATM-228ENST00000639240 498 ntTSL 5 BASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 MTND5P33-201ENST00000571250 1450 ntBASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
USHBP1Q8N6Y0 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 SAMMSON-213ENST00000641336 1521 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 MARK2P15-201ENST00000432204 2186 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 Y_RNA.128-201ENST00000363391 112 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 RNU6-996P-201ENST00000365438 107 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 Y_RNA.387-201ENST00000383918 102 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 Y_RNA.422-201ENST00000384054 114 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 RNU6-606P-201ENST00000384721 111 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 CD3D-202ENST00000392884 476 ntTSL 2 BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 RPL7P60-201ENST00000397636 735 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 RNA5SP296-201ENST00000410523 111 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 RNU6-1148P-201ENST00000410992 104 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 SYF2P2-201ENST00000417620 583 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 RPS15AP12-201ENST00000419498 388 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 AC099336.2-201ENST00000422457 254 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 DUTP6-201ENST00000425573 462 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 RPS26P56-201ENST00000444468 240 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 HMGB1P15-201ENST00000453854 435 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 AC099560.2-201ENST00000457554 255 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 RNU6-329P-201ENST00000459618 107 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 MRPS17P3-201ENST00000465453 385 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 AC093677.1-201ENST00000514414 678 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 Y_RNA.691-201ENST00000516611 103 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 RNA5SP337-201ENST00000517007 109 ntBASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms