Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 MFSD8-233ENST00000641482 4860 ntBASIC3.53□□□□□ -1.84
PRPF39Q86UA1 AL391994.1-201ENST00000254724 282 ntBASIC3.53□□□□□ -1.84
PRPF39Q86UA1 MIR514A1-201ENST00000385133 98 ntBASIC3.53□□□□□ -1.84
PRPF39Q86UA1 AL354719.1-201ENST00000406535 843 ntBASIC3.53□□□□□ -1.84
PRPF39Q86UA1 HMGN1P24-201ENST00000412282 298 ntBASIC3.53□□□□□ -1.84
PRPF39Q86UA1 UBE2FP1-201ENST00000416536 447 ntBASIC3.53□□□□□ -1.84
PRPF39Q86UA1 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC3.53□□□□□ -1.84
PRPF39Q86UA1 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC3.53□□□□□ -1.84
PRPF39Q86UA1 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.53□□□□□ -1.84
PRPF39Q86UA1 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC3.53□□□□□ -1.84
PRPF39Q86UA1 MTCYBP3-201ENST00000445588 1137 ntBASIC3.53□□□□□ -1.84
PRPF39Q86UA1 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC3.53□□□□□ -1.84
PRPF39Q86UA1 AP1S2P1-201ENST00000457344 379 ntBASIC3.53□□□□□ -1.84
PRPF39Q86UA1 RN7SL442P-201ENST00000473804 320 ntBASIC3.53□□□□□ -1.84
PRPF39Q86UA1 AC025518.1-201ENST00000479856 347 ntBASIC3.53□□□□□ -1.84
PRPF39Q86UA1 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
PRPF39Q86UA1 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.53□□□□□ -1.84
PRPF39Q86UA1 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC3.53□□□□□ -1.84
PRPF39Q86UA1 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.53□□□□□ -1.84
PRPF39Q86UA1 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.53□□□□□ -1.84
PRPF39Q86UA1 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.53□□□□□ -1.84
PRPF39Q86UA1 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.53□□□□□ -1.84
PRPF39Q86UA1 AC112204.3-201ENST00000623822 332 ntBASIC3.53□□□□□ -1.84
PRPF39Q86UA1 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.53□□□□□ -1.84
PRPF39Q86UA1 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.53□□□□□ -1.84
PRPF39Q86UA1 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.53□□□□□ -1.84
PRPF39Q86UA1 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PRPF39Q86UA1 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PRPF39Q86UA1 FAM35BP-202ENST00000497389 3337 ntBASIC3.53□□□□□ -1.84
PRPF39Q86UA1 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 TPTE2P4-201ENST00000258589 1605 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AL513302.2-201ENST00000562313 1842 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 RNU1-75P-201ENST00000347264 129 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 RNU4-35P-201ENST00000362588 141 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 RNU1-33P-201ENST00000364249 162 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 SNORA36C-201ENST00000384289 132 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 U3.19-201ENST00000390893 196 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 RPS7P13-201ENST00000413955 498 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 MTCYBP39-201ENST00000437562 491 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 TPT1P14-201ENST00000448018 505 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AC135721.1-201ENST00000497954 479 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AC006445.2-201ENST00000510061 472 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 LTV1P1-201ENST00000510683 1237 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 SNORA31.1-201ENST00000515993 133 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 SNORA31.5-201ENST00000516190 133 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 RNU6-1256P-201ENST00000516539 103 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 SNORD59.2-201ENST00000516873 68 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AL355836.1-201ENST00000555951 870 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AC037471.2-201ENST00000564941 598 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 TPMTP1-201ENST00000592307 737 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AC018714.1-201ENST00000605028 208 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AL139344.1-201ENST00000605228 195 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AC107214.2-201ENST00000608204 634 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AL355816.2-201ENST00000610049 647 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AL442067.2-201ENST00000614033 363 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AC131159.1-201ENST00000621854 213 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AC027309.3-201ENST00000623419 351 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AP000770.2-201ENST00000623694 100 ntBASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
PRPF39Q86UA1 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.51□□□□□ -1.85
PRPF39Q86UA1 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.51□□□□□ -1.85
PRPF39Q86UA1 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
PRPF39Q86UA1 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
PRPF39Q86UA1 RNU6-223P-201ENST00000362830 107 ntBASIC3.51□□□□□ -1.85
PRPF39Q86UA1 RNU6-660P-201ENST00000364566 109 ntBASIC3.51□□□□□ -1.85
PRPF39Q86UA1 RNU6-754P-201ENST00000391166 107 ntBASIC3.51□□□□□ -1.85
PRPF39Q86UA1 RPL17P50-201ENST00000396131 546 ntBASIC3.51□□□□□ -1.85
PRPF39Q86UA1 RAP1BP1-201ENST00000412709 553 ntBASIC3.51□□□□□ -1.85
PRPF39Q86UA1 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.51□□□□□ -1.85
PRPF39Q86UA1 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.51□□□□□ -1.85
PRPF39Q86UA1 AC009237.8-201ENST00000445492 379 ntBASIC3.51□□□□□ -1.85
PRPF39Q86UA1 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.51□□□□□ -1.85
PRPF39Q86UA1 HMGB3P8-201ENST00000449709 577 ntBASIC3.51□□□□□ -1.85
PRPF39Q86UA1 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.51□□□□□ -1.85
PRPF39Q86UA1 RN7SL807P-201ENST00000470923 297 ntBASIC3.51□□□□□ -1.85
PRPF39Q86UA1 AC021205.2-201ENST00000480069 347 ntBASIC3.51□□□□□ -1.85
PRPF39Q86UA1 AC021678.1-201ENST00000505195 936 ntBASIC3.51□□□□□ -1.85
PRPF39Q86UA1 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms