Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 AP004371.1-201ENST00000525240 214 ntBASIC4.41□□□□□ -1.7
VPS53Q5VIR6 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 AC012182.1-201ENST00000570133 895 ntBASIC4.41□□□□□ -1.7
VPS53Q5VIR6 AL391840.1-201ENST00000571144 367 ntBASIC4.41□□□□□ -1.7
VPS53Q5VIR6 KLKP1-201ENST00000595979 403 ntBASIC4.41□□□□□ -1.7
VPS53Q5VIR6 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 AL158209.2-201ENST00000619266 216 ntBASIC4.41□□□□□ -1.7
VPS53Q5VIR6 TEX41-300ENST00000631048 69 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 AC097714.1-201ENST00000511272 1647 ntBASIC4.41□□□□□ -1.7
VPS53Q5VIR6 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS53Q5VIR6 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
VPS53Q5VIR6 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
VPS53Q5VIR6 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
VPS53Q5VIR6 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
VPS53Q5VIR6 MIR423-201ENST00000362201 94 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 RNU6-283P-201ENST00000364788 107 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 RNU6-744P-201ENST00000365557 107 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.4□□□□□ -1.71
VPS53Q5VIR6 RNU6-1316P-201ENST00000384242 108 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 RNU6-878P-201ENST00000384578 110 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 RPS20P2-201ENST00000402520 389 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 AL583834.1-201ENST00000406943 343 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 TIMM9P3-201ENST00000428659 274 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 NEK4P1-201ENST00000433383 879 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 AC007389.2-201ENST00000434630 306 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 RPL22P17-201ENST00000438729 315 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 MTATP6P30-201ENST00000443540 664 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 AC099563.1-201ENST00000456086 418 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 RPL31P58-201ENST00000469001 379 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 AL121769.1-201ENST00000469473 401 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 HMGB1P36-201ENST00000487709 576 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 AP001025.2-201ENST00000490908 477 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS53Q5VIR6 HMGB1P29-201ENST00000505659 499 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 PRDX4P1-201ENST00000507189 574 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC4.4□□□□□ -1.71
VPS53Q5VIR6 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC4.4□□□□□ -1.71
VPS53Q5VIR6 RNU2-58P-201ENST00000516403 183 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 TRMT10BP1-201ENST00000519377 943 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC4.4□□□□□ -1.71
VPS53Q5VIR6 AP003122.4-201ENST00000530980 758 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS53Q5VIR6 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC4.4□□□□□ -1.71
VPS53Q5VIR6 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS53Q5VIR6 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS53Q5VIR6 AC007014.2-201ENST00000615581 479 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 CR392039.5-201ENST00000623201 510 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 AC019226.1-201ENST00000625666 515 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS53Q5VIR6 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
VPS53Q5VIR6 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS53Q5VIR6 AC092447.10-201ENST00000620607 1652 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS53Q5VIR6 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS53Q5VIR6 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.4□□□□□ -1.71
VPS53Q5VIR6 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS53Q5VIR6 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS53Q5VIR6 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
VPS53Q5VIR6 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS53Q5VIR6 AC007823.1-201ENST00000569932 1566 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 AL049780.3-201ENST00000624612 1583 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 AC007656.2-201ENST00000624902 4547 ntBASIC4.4□□□□□ -1.71
VPS53Q5VIR6 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS53Q5VIR6 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
VPS53Q5VIR6 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS53Q5VIR6 Y_RNA.9-201ENST00000362354 101 ntBASIC4.39□□□□□ -1.71
VPS53Q5VIR6 U8.3-201ENST00000363321 132 ntBASIC4.39□□□□□ -1.71
VPS53Q5VIR6 RNU6-867P-201ENST00000364956 107 ntBASIC4.39□□□□□ -1.71
VPS53Q5VIR6 SNORA62.3-201ENST00000365110 153 ntBASIC4.39□□□□□ -1.71
VPS53Q5VIR6 RNY3P14-201ENST00000384309 102 ntBASIC4.39□□□□□ -1.71
VPS53Q5VIR6 MIR607-201ENST00000385241 96 ntBASIC4.39□□□□□ -1.71
VPS53Q5VIR6 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
VPS53Q5VIR6 RPL21P17-201ENST00000397467 475 ntBASIC4.39□□□□□ -1.71
VPS53Q5VIR6 RPL7P25-201ENST00000404151 721 ntBASIC4.39□□□□□ -1.71
VPS53Q5VIR6 SPA17P1-201ENST00000416656 452 ntBASIC4.39□□□□□ -1.71
VPS53Q5VIR6 AL035423.1-201ENST00000420331 213 ntBASIC4.39□□□□□ -1.71
VPS53Q5VIR6 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS53Q5VIR6 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS53Q5VIR6 AL138799.3-201ENST00000438968 350 ntBASIC4.39□□□□□ -1.71
VPS53Q5VIR6 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS53Q5VIR6 WASF1P1-201ENST00000447560 1131 ntBASIC4.39□□□□□ -1.71
VPS53Q5VIR6 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS53Q5VIR6 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS53Q5VIR6 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS53Q5VIR6 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS53Q5VIR6 TXNP6-201ENST00000510190 310 ntBASIC4.39□□□□□ -1.71
VPS53Q5VIR6 RNU6-201P-201ENST00000517100 61 ntBASIC4.39□□□□□ -1.71
VPS53Q5VIR6 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS53Q5VIR6 AL157394.1-201ENST00000562983 1224 ntBASIC4.39□□□□□ -1.71
VPS53Q5VIR6 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS53Q5VIR6 AC034268.2-201ENST00000571784 482 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms