Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 AL133445.1-201ENST00000467051 452 ntBASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 AC010631.1-201ENST00000474150 156 ntBASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 SNRPCP3-201ENST00000474888 476 ntBASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 RN7SL570P-201ENST00000484405 292 ntBASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 RN7SKP60-201ENST00000516985 239 ntBASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 AC051619.2-201ENST00000559063 397 ntBASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 AC009127.3-201ENST00000570531 403 ntBASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 MIR5692C2-201ENST00000577959 77 ntBASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 MIR548X2-201ENST00000579776 100 ntBASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 AC067852.3-201ENST00000589177 561 ntBASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 MIR8076-201ENST00000611401 83 ntBASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 TUG1_2.1-201ENST00000614234 87 ntBASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
RNFT1Q5M7Z0 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 AC005725.1-201ENST00000577346 2607 ntBASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 AC025470.1-201ENST00000510053 2032 ntBASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 AC110774.1-201ENST00000623567 2018 ntBASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 MIR539-201ENST00000365690 78 ntBASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 AC019155.1-201ENST00000382242 574 ntBASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 RNU6-171P-201ENST00000384354 107 ntBASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 SNORA12.2-201ENST00000391040 156 ntBASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 RNY4P18-201ENST00000391107 89 ntBASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 AL358453.1-201ENST00000422522 250 ntBASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 AL162389.1-201ENST00000449233 177 ntBASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 AP001025.1-201ENST00000486139 332 ntBASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 RN7SL547P-201ENST00000490793 290 ntBASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 MTND3P25-201ENST00000509243 135 ntBASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 BRDTP1-201ENST00000605735 677 ntBASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 AC010329.2-201ENST00000595195 2737 ntBASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
RNFT1Q5M7Z0 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 Y_RNA.23-201ENST00000362496 106 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 Y_RNA.286-201ENST00000364813 102 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 TMSB10P2-201ENST00000416049 131 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 AL133173.1-201ENST00000423458 397 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 AL590399.2-201ENST00000427536 309 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 MTND4LP9-201ENST00000427694 174 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 AC004938.1-201ENST00000438468 308 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 AC234775.1-201ENST00000454247 670 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 U8.21-201ENST00000459536 136 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 RN7SL799P-201ENST00000475891 298 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 AC006539.1-201ENST00000481419 501 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 AC091959.1-201ENST00000495857 238 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 RNU4ATAC15P-201ENST00000516415 126 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 SNORA27.4-201ENST00000516650 95 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 MIR1269B-201ENST00000580405 75 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 MIR4443-201ENST00000585052 53 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 AC067852.4-201ENST00000590314 478 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 SUMO2P15-201ENST00000604285 278 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 AL355816.1-201ENST00000607951 118 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 AC011476.5-201ENST00000615594 130 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 AC005332.5-201ENST00000591222 2919 ntBASIC5.17□□□□□ -1.58
RNFT1Q5M7Z0 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms