Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MTCYBP33-201ENST00000575007 1130 ntBASIC3.7□□□□□ -1.82
USP41Q3LFD5 MIR3186-201ENST00000577404 85 ntBASIC3.7□□□□□ -1.82
USP41Q3LFD5 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.7□□□□□ -1.82
USP41Q3LFD5 MIR5697-201ENST00000578045 78 ntBASIC3.7□□□□□ -1.82
USP41Q3LFD5 RSL24D1P11-201ENST00000591045 491 ntBASIC3.7□□□□□ -1.82
USP41Q3LFD5 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.7□□□□□ -1.82
USP41Q3LFD5 AC011451.2-201ENST00000604303 598 ntBASIC3.7□□□□□ -1.82
USP41Q3LFD5 YPEL5P2-201ENST00000605553 359 ntBASIC3.7□□□□□ -1.82
USP41Q3LFD5 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
USP41Q3LFD5 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.7□□□□□ -1.82
USP41Q3LFD5 CEP170P1-201ENST00000502249 4587 ntBASIC3.7□□□□□ -1.82
USP41Q3LFD5 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.7□□□□□ -1.82
USP41Q3LFD5 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
USP41Q3LFD5 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
USP41Q3LFD5 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.69□□□□□ -1.82
USP41Q3LFD5 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.69□□□□□ -1.82
USP41Q3LFD5 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
USP41Q3LFD5 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
USP41Q3LFD5 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
USP41Q3LFD5 SNORA31-201ENST00000362607 130 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 RNA5SP189-201ENST00000364920 115 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 Y_RNA.318-201ENST00000365131 97 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 AL138880.1-201ENST00000405824 642 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 RAD23BP2-201ENST00000416003 1207 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 MTCO3P12-201ENST00000416718 547 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 TOMM22P1-201ENST00000418578 312 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.69□□□□□ -1.82
USP41Q3LFD5 AL137014.1-201ENST00000420490 1226 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.69□□□□□ -1.82
USP41Q3LFD5 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.69□□□□□ -1.82
USP41Q3LFD5 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.69□□□□□ -1.82
USP41Q3LFD5 UBE2V1P13-201ENST00000436983 439 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 RPL22P17-201ENST00000438729 315 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.69□□□□□ -1.82
USP41Q3LFD5 USP9YP12-201ENST00000450481 570 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 AL590365.1-201ENST00000450788 243 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 MRPS31P2-201ENST00000451581 518 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 RNU6-956P-201ENST00000458868 103 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.69□□□□□ -1.82
USP41Q3LFD5 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
USP41Q3LFD5 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.69□□□□□ -1.82
USP41Q3LFD5 MTND4P2-201ENST00000507767 1203 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
USP41Q3LFD5 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.69□□□□□ -1.82
USP41Q3LFD5 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.69□□□□□ -1.82
USP41Q3LFD5 AP003497.1-201ENST00000528472 562 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 AP002748.2-201ENST00000528671 348 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 MTCYBP41-201ENST00000528913 1123 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.69□□□□□ -1.82
USP41Q3LFD5 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
USP41Q3LFD5 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.69□□□□□ -1.82
USP41Q3LFD5 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.69□□□□□ -1.82
USP41Q3LFD5 OR4K8P-201ENST00000578842 1048 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 AC006557.5-201ENST00000603126 811 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 AC005000.2-201ENST00000605468 310 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 AC025594.3-201ENST00000613068 790 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.69□□□□□ -1.82
USP41Q3LFD5 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.69□□□□□ -1.82
USP41Q3LFD5 AC090582.1-201ENST00000636321 199 ntBASIC3.69□□□□□ -1.82
USP41Q3LFD5 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
USP41Q3LFD5 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
USP41Q3LFD5 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.68□□□□□ -1.82
USP41Q3LFD5 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
USP41Q3LFD5 FRG1BP-201ENST00000278882 761 ntBASIC3.68□□□□□ -1.82
USP41Q3LFD5 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
USP41Q3LFD5 Y_RNA.201-201ENST00000364052 96 ntBASIC3.68□□□□□ -1.82
USP41Q3LFD5 SNORA7.2-201ENST00000364446 145 ntBASIC3.68□□□□□ -1.82
USP41Q3LFD5 RNU6-283P-201ENST00000364788 107 ntBASIC3.68□□□□□ -1.82
USP41Q3LFD5 SNORD6-201ENST00000365444 73 ntBASIC3.68□□□□□ -1.82
USP41Q3LFD5 Y_RNA.436-201ENST00000384097 102 ntBASIC3.68□□□□□ -1.82
USP41Q3LFD5 Y_RNA.553-201ENST00000384670 102 ntBASIC3.68□□□□□ -1.82
USP41Q3LFD5 RNU6-114P-201ENST00000384704 105 ntBASIC3.68□□□□□ -1.82
USP41Q3LFD5 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
USP41Q3LFD5 U3.20-201ENST00000390909 217 ntBASIC3.68□□□□□ -1.82
USP41Q3LFD5 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.68□□□□□ -1.82
USP41Q3LFD5 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.68□□□□□ -1.82
USP41Q3LFD5 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.68□□□□□ -1.82
USP41Q3LFD5 MTND1P28-201ENST00000435623 950 ntBASIC3.68□□□□□ -1.82
USP41Q3LFD5 AL138799.3-201ENST00000438968 350 ntBASIC3.68□□□□□ -1.82
USP41Q3LFD5 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC3.68□□□□□ -1.82
USP41Q3LFD5 RNA5SP269-201ENST00000459032 137 ntBASIC3.68□□□□□ -1.82
USP41Q3LFD5 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.68□□□□□ -1.82
USP41Q3LFD5 RNU6-528P-201ENST00000516926 100 ntBASIC3.68□□□□□ -1.82
USP41Q3LFD5 SNORA31.20-201ENST00000517111 133 ntBASIC3.68□□□□□ -1.82
USP41Q3LFD5 AC008489.1-201ENST00000524271 483 ntBASIC3.68□□□□□ -1.82
USP41Q3LFD5 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.68□□□□□ -1.82
USP41Q3LFD5 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.68□□□□□ -1.82
USP41Q3LFD5 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.68□□□□□ -1.82
USP41Q3LFD5 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.68□□□□□ -1.82
USP41Q3LFD5 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.68□□□□□ -1.82
USP41Q3LFD5 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.68□□□□□ -1.82
USP41Q3LFD5 AC060771.1-201ENST00000582031 164 ntBASIC3.68□□□□□ -1.82
USP41Q3LFD5 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3.68□□□□□ -1.82
USP41Q3LFD5 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.68□□□□□ -1.82
USP41Q3LFD5 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
USP41Q3LFD5 AC103710.3-201ENST00000608157 948 ntBASIC3.68□□□□□ -1.82
USP41Q3LFD5 TUG1_1.1-201ENST00000610654 145 ntBASIC3.68□□□□□ -1.82
USP41Q3LFD5 AC002550.2-201ENST00000621246 394 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms