Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 SNORD97-201ENST00000459187 142 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 AC010631.1-201ENST00000474150 156 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 NIP7P2-201ENST00000485801 544 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXA4Q00056 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.7□□□□□ -1.82
HOXA4Q00056 SCARNA15.1-201ENST00000516384 125 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 RN7SKP256-201ENST00000517201 314 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 RAB9BP1-201ENST00000519581 626 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 RPL7P20-201ENST00000520308 745 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXA4Q00056 IGLV3-26-201ENST00000520756 302 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXA4Q00056 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXA4Q00056 AC126177.3-201ENST00000551839 688 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 NCAPGP2-201ENST00000557911 754 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 AC005668.1-201ENST00000571142 476 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 MIR4458-201ENST00000578872 75 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 MIR5583-1-201ENST00000580941 59 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA4Q00056 MIR5096-201ENST00000583713 70 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.7□□□□□ -1.82
HOXA4Q00056 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC3.7□□□□□ -1.82
HOXA4Q00056 TEX41-238ENST00000604253 709 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXA4Q00056 AL034351.1-201ENST00000605288 668 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 AC007546.1-201ENST00000619452 559 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 AP005019.3-201ENST00000620418 560 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 AC007546.2-201ENST00000623996 360 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXA4Q00056 EIF2AP4-201ENST00000424793 1781 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 DPY19L2P2-203ENST00000435536 1858 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA4Q00056 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA4Q00056 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC3.7□□□□□ -1.82
HOXA4Q00056 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXA4Q00056 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA4Q00056 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
HOXA4Q00056 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA4Q00056 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC3.7□□□□□ -1.82
HOXA4Q00056 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA4Q00056 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
HOXA4Q00056 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA4Q00056 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
HOXA4Q00056 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA4Q00056 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA4Q00056 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.69□□□□□ -1.82
HOXA4Q00056 OR56B2P-202ENST00000641377 2453 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXA4Q00056 GABPAP-201ENST00000419271 1356 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 LARP1BP1-201ENST00000506036 1359 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXA4Q00056 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
HOXA4Q00056 RPL32P3-201ENST00000359025 275 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 Y_RNA.474-201ENST00000384341 102 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 RNU6-712P-201ENST00000410558 100 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 RNU4-25P-201ENST00000410569 230 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 AC016397.1-201ENST00000412463 242 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXA4Q00056 SSXP9-201ENST00000417503 292 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 AL356387.2-201ENST00000422272 243 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 MTND6P18-201ENST00000439477 513 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXA4Q00056 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXA4Q00056 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXA4Q00056 AL162389.1-201ENST00000449233 177 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 AL162591.2-201ENST00000449634 317 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 PPP1R2P5-201ENST00000457256 603 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 SNRPFP3-201ENST00000457792 225 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXA4Q00056 RPL23AP24-201ENST00000458203 385 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXA4Q00056 AC079804.1-201ENST00000461922 436 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 AC083904.1-201ENST00000487828 231 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 DEFB109F-201ENST00000491870 277 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 AC091885.1-201ENST00000506658 268 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 AC104806.1-201ENST00000508720 308 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 FAM206BP-201ENST00000510179 541 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 SNORA19.2-201ENST00000516013 114 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXA4Q00056 AC100870.1-201ENST00000522035 505 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXA4Q00056 AC109635.4-202ENST00000531666 412 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC3.69□□□□□ -1.82
HOXA4Q00056 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXA4Q00056 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXA4Q00056 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXA4Q00056 AC010928.3-201ENST00000587712 541 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 AC005498.1-201ENST00000592125 465 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 CTHRC1P1-201ENST00000605383 469 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 AC104237.2-201ENST00000612456 443 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 AP001486.3-201ENST00000615334 372 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 SNHG22-203ENST00000617833 660 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 CCL14-204ENST00000622526 472 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXA4Q00056 AL445363.3-201ENST00000623080 671 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXA4Q00056 MIR6715B-201ENST00000637172 77 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 OR52H1-202ENST00000641796 1061 ntBASIC3.69□□□□□ -1.82
HOXA4Q00056 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
HOXA4Q00056 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
HOXA4Q00056 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms