Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.71□□□□□ -1.66
RNF4P78317 EIF2AP4-201ENST00000424793 1781 ntBASIC4.7□□□□□ -1.66
RNF4P78317 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
RNF4P78317 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC4.7□□□□□ -1.66
RNF4P78317 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.7□□□□□ -1.66
RNF4P78317 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
RNF4P78317 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.7□□□□□ -1.66
RNF4P78317 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.7□□□□□ -1.66
RNF4P78317 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.7□□□□□ -1.66
RNF4P78317 RNU6-1303P-201ENST00000364841 107 ntBASIC4.7□□□□□ -1.66
RNF4P78317 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
RNF4P78317 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
RNF4P78317 RNU6-14P-201ENST00000384630 106 ntBASIC4.7□□□□□ -1.66
RNF4P78317 SNORA66-201ENST00000384792 133 ntBASIC4.7□□□□□ -1.66
RNF4P78317 MIR153-1-201ENST00000384914 90 ntBASIC4.7□□□□□ -1.66
RNF4P78317 RNU6-328P-201ENST00000390887 106 ntBASIC4.7□□□□□ -1.66
RNF4P78317 SNORA75.6-201ENST00000391318 127 ntBASIC4.7□□□□□ -1.66
RNF4P78317 AL078599.1-201ENST00000402075 293 ntBASIC4.7□□□□□ -1.66
RNF4P78317 AL035079.1-201ENST00000405210 287 ntBASIC4.7□□□□□ -1.66
RNF4P78317 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC4.7□□□□□ -1.66
RNF4P78317 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.7□□□□□ -1.66
RNF4P78317 COX6CP13-201ENST00000428703 226 ntBASIC4.7□□□□□ -1.66
RNF4P78317 RPL23AP69-201ENST00000431134 458 ntBASIC4.7□□□□□ -1.66
RNF4P78317 HIGD1AP11-201ENST00000438361 280 ntBASIC4.7□□□□□ -1.66
RNF4P78317 RPL34P20-201ENST00000442771 351 ntBASIC4.7□□□□□ -1.66
RNF4P78317 AL354714.3-201ENST00000447284 493 ntBASIC4.7□□□□□ -1.66
RNF4P78317 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.7□□□□□ -1.66
RNF4P78317 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.7□□□□□ -1.66
RNF4P78317 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.7□□□□□ -1.66
RNF4P78317 AC103987.1-201ENST00000473394 348 ntBASIC4.7□□□□□ -1.66
RNF4P78317 RPL21P103-201ENST00000479921 488 ntBASIC4.7□□□□□ -1.66
RNF4P78317 AC093270.2-201ENST00000486157 792 ntBASIC4.7□□□□□ -1.66
RNF4P78317 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC4.7□□□□□ -1.66
RNF4P78317 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.7□□□□□ -1.66
RNF4P78317 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.7□□□□□ -1.66
RNF4P78317 AC021146.3-201ENST00000511911 260 ntBASIC4.7□□□□□ -1.66
RNF4P78317 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.7□□□□□ -1.66
RNF4P78317 MTCO2P24-201ENST00000515611 426 ntBASIC4.7□□□□□ -1.66
RNF4P78317 RNU6-120P-201ENST00000516077 103 ntBASIC4.7□□□□□ -1.66
RNF4P78317 AC008694.2-201ENST00000517591 306 ntBASIC4.7□□□□□ -1.66
RNF4P78317 AC105031.1-201ENST00000518550 476 ntBASIC4.7□□□□□ -1.66
RNF4P78317 AP000676.2-201ENST00000529711 301 ntBASIC4.7□□□□□ -1.66
RNF4P78317 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC4.7□□□□□ -1.66
RNF4P78317 AL161713.1-201ENST00000555538 145 ntBASIC4.7□□□□□ -1.66
RNF4P78317 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.7□□□□□ -1.66
RNF4P78317 TVP23CP2-201ENST00000571473 623 ntBASIC4.7□□□□□ -1.66
RNF4P78317 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.7□□□□□ -1.66
RNF4P78317 MIR4691-201ENST00000583764 85 ntBASIC4.7□□□□□ -1.66
RNF4P78317 7SK.7-201ENST00000603504 247 ntBASIC4.7□□□□□ -1.66
RNF4P78317 AC105254.2-201ENST00000603636 436 ntBASIC4.7□□□□□ -1.66
RNF4P78317 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.7□□□□□ -1.66
RNF4P78317 SDR42E1P2-201ENST00000614861 481 ntBASIC4.7□□□□□ -1.66
RNF4P78317 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.7□□□□□ -1.66
RNF4P78317 AL591926.8-201ENST00000616876 211 ntBASIC4.7□□□□□ -1.66
RNF4P78317 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
RNF4P78317 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.7□□□□□ -1.66
RNF4P78317 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
RNF4P78317 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
RNF4P78317 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.7□□□□□ -1.66
RNF4P78317 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
RNF4P78317 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
RNF4P78317 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
RNF4P78317 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.69□□□□□ -1.66
RNF4P78317 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
RNF4P78317 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
RNF4P78317 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
RNF4P78317 SNORA58B-201ENST00000364259 136 ntBASIC4.69□□□□□ -1.66
RNF4P78317 Y_RNA.401-201ENST00000383965 117 ntBASIC4.69□□□□□ -1.66
RNF4P78317 RNU6-26P-201ENST00000383985 107 ntBASIC4.69□□□□□ -1.66
RNF4P78317 RNY1P14-201ENST00000384426 108 ntBASIC4.69□□□□□ -1.66
RNF4P78317 Y_RNA.557-201ENST00000384680 107 ntBASIC4.69□□□□□ -1.66
RNF4P78317 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.69□□□□□ -1.66
RNF4P78317 AL160275.3-201ENST00000423876 471 ntBASIC4.69□□□□□ -1.66
RNF4P78317 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC4.69□□□□□ -1.66
RNF4P78317 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC4.69□□□□□ -1.66
RNF4P78317 BX323845.1-201ENST00000432417 179 ntBASIC4.69□□□□□ -1.66
RNF4P78317 AL591704.1-201ENST00000432574 275 ntBASIC4.69□□□□□ -1.66
RNF4P78317 AL591212.2-201ENST00000433923 257 ntBASIC4.69□□□□□ -1.66
RNF4P78317 PSMD10P3-201ENST00000437000 448 ntBASIC4.69□□□□□ -1.66
RNF4P78317 RPL29P29-201ENST00000448725 423 ntBASIC4.69□□□□□ -1.66
RNF4P78317 GSTA11P-201ENST00000452866 669 ntBASIC4.69□□□□□ -1.66
RNF4P78317 RN7SL610P-201ENST00000463845 291 ntBASIC4.69□□□□□ -1.66
RNF4P78317 AC007686.1-201ENST00000488511 463 ntBASIC4.69□□□□□ -1.66
RNF4P78317 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.69□□□□□ -1.66
RNF4P78317 RPS27AP13-201ENST00000498403 237 ntBASIC4.69□□□□□ -1.66
RNF4P78317 SNORA25.10-201ENST00000515926 124 ntBASIC4.69□□□□□ -1.66
RNF4P78317 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.69□□□□□ -1.66
RNF4P78317 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.69□□□□□ -1.66
RNF4P78317 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.69□□□□□ -1.66
RNF4P78317 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
RNF4P78317 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.69□□□□□ -1.66
RNF4P78317 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.69□□□□□ -1.66
RNF4P78317 AC005951.2-201ENST00000576282 495 ntBASIC4.69□□□□□ -1.66
RNF4P78317 MIR4646-201ENST00000580775 63 ntBASIC4.69□□□□□ -1.66
RNF4P78317 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.69□□□□□ -1.66
RNF4P78317 PRPF19P1-201ENST00000584766 898 ntBASIC4.69□□□□□ -1.66
RNF4P78317 VN1R107P-201ENST00000601784 209 ntBASIC4.69□□□□□ -1.66
RNF4P78317 AC012119.1-201ENST00000603184 222 ntBASIC4.69□□□□□ -1.66
RNF4P78317 AC124312.5-201ENST00000604451 268 ntBASIC4.69□□□□□ -1.66
RNF4P78317 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms