Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC011979.2-201ENST00000527568 352 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 AC125611.2-201ENST00000551907 647 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 AL352979.3-201ENST00000553515 247 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD3P31249 AC025884.1-201ENST00000556034 378 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXD3P31249 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXD3P31249 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD3P31249 AL591034.3-201ENST00000605511 685 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 DISC2.1-201ENST00000612827 205 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 AC004696.1-201ENST00000614345 607 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 AC100810.6-201ENST00000638068 285 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXD3P31249 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD3P31249 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD3P31249 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXD3P31249 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
HOXD3P31249 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD3P31249 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD3P31249 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD3P31249 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC3.39□□□□□ -1.87
HOXD3P31249 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD3P31249 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD3P31249 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD3P31249 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HOXD3P31249 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HOXD3P31249 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.38□□□□□ -1.87
HOXD3P31249 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXD3P31249 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXD3P31249 SPRR2C-201ENST00000290702 219 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 MIR383-201ENST00000362257 73 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 RNA5SP167-201ENST00000365461 116 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 RNU4-48P-201ENST00000365559 182 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 UBE2V1P2-201ENST00000397758 440 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXD3P31249 AC245054.1-201ENST00000420944 258 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC3.38□□□□□ -1.87
HOXD3P31249 BEND7P1-201ENST00000422058 457 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXD3P31249 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD3P31249 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD3P31249 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC3.38□□□□□ -1.87
HOXD3P31249 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXD3P31249 AC016696.1-201ENST00000446949 318 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AL359073.1-201ENST00000448036 403 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AC073415.1-201ENST00000449240 153 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXD3P31249 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD3P31249 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXD3P31249 AC234775.1-201ENST00000454247 670 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AL356010.1-201ENST00000456364 102 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXD3P31249 SNORA84-201ENST00000459229 133 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 RPL23AP65-201ENST00000475608 468 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AC126389.1-201ENST00000477436 290 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AL163973.1-201ENST00000484753 577 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXD3P31249 FTH1P9-201ENST00000513251 355 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 SNORD27.1-201ENST00000516319 72 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 RNU2-10P-201ENST00000516375 211 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 NARSP2-201ENST00000518524 679 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.38□□□□□ -1.87
HOXD3P31249 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.38□□□□□ -1.87
HOXD3P31249 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC3.38□□□□□ -1.87
HOXD3P31249 AC007424.1-203ENST00000554613 687 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD3P31249 AL138976.2-201ENST00000563989 694 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXD3P31249 AC034105.4-201ENST00000568304 277 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AC015917.1-201ENST00000579654 510 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD3P31249 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXD3P31249 XIAPP1-201ENST00000603162 600 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AC079587.1-201ENST00000603846 277 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AC113403.1-201ENST00000604910 193 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 TUG1_1.1-201ENST00000610654 145 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD3P31249 AC093838.1-201ENST00000613014 469 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 SNX18P1Y-201ENST00000616231 511 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 uc_338.13-201ENST00000618243 179 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AC244100.1-202ENST00000621554 382 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AC005858.4-201ENST00000623191 700 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AC007546.2-201ENST00000623996 360 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AC008785.1-201ENST00000624475 456 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 MIR3653-201ENST00000625572 110 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
HOXD3P31249 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC3.38□□□□□ -1.87
HOXD3P31249 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXD3P31249 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
HOXD3P31249 RIOK3P1-201ENST00000418778 1528 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HOXD3P31249 ASNSP3-201ENST00000451989 1306 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 EEF1A1P42-201ENST00000613436 1331 ntBASIC3.38□□□□□ -1.87
HOXD3P31249 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXD3P31249 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
HOXD3P31249 MTND5P3-201ENST00000438536 1800 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD3P31249 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXD3P31249 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD3P31249 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms