Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL031176.1-201ENST00000604554 466 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AF246928.1-201ENST00000623768 87 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AC068647.1-201ENST00000489539 2265 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 ANKRD20A17P-201ENST00000511745 1330 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 Y_RNA.111-201ENST00000363248 100 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 RNU6-501P-201ENST00000364072 100 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 RNU6-660P-201ENST00000364566 109 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 SNORA48.5-201ENST00000391143 135 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AL356421.1-201ENST00000403255 413 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AC009518.2-201ENST00000418056 731 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 RPS27AP14-201ENST00000422868 454 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AL445669.1-201ENST00000426743 755 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AL831737.1-201ENST00000441288 271 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AL357552.1-201ENST00000445254 415 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 RPL23AP67-201ENST00000465341 474 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AC021382.1-201ENST00000483523 359 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 HMGB1P36-201ENST00000487709 576 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AC096751.1-202ENST00000502691 1067 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 SNORA70.19-201ENST00000516717 90 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AC103783.1-201ENST00000520506 373 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AC091489.2-201ENST00000566263 604 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AC011451.2-201ENST00000604303 598 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AC092354.1-201ENST00000606057 376 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AC107214.2-201ENST00000608204 634 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AL353748.2-201ENST00000622148 471 ntBASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC3Q9BQI4 AC012321.1-201ENST00000561622 1588 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 CR383658.2-201ENST00000547576 1525 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 AC091152.2-201ENST00000591628 2569 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 AC138915.3-201ENST00000562908 1389 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 RNU6-97P-201ENST00000363387 104 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 RNU6-1207P-201ENST00000384343 107 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 RPS3AP26-201ENST00000398259 784 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 RNU2-47P-201ENST00000410649 186 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 MTND1P21-201ENST00000412991 285 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 DUTP6-201ENST00000425573 462 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 MED14P1-201ENST00000430517 648 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 RPS29P31-201ENST00000446147 164 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 AC104308.1-201ENST00000454621 333 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 MTND3P7-201ENST00000474435 343 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 RPL21P13-201ENST00000488305 481 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 RN7SL504P-201ENST00000494496 287 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 AC110794.1-201ENST00000505816 425 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 APOOP4-201ENST00000513530 597 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 AC017037.2-201ENST00000513850 890 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 AC087373.1-201ENST00000524920 491 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 AC026333.2-201ENST00000542164 106 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 AC126177.3-201ENST00000551839 688 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 AL121576.1-201ENST00000556055 276 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 MIR4307-201ENST00000582802 84 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 MIR6130-201ENST00000619419 109 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 AC009902.3-201ENST00000606235 2172 ntBASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.29□□□□□ -1.88
CCDC3Q9BQI4 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 RNA5SP374-201ENST00000362939 125 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 129.2 ms