Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AC109635.4-202ENST00000531666 412 ntBASIC2.61□□□□□ -1.99
CDX2Q99626 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.61□□□□□ -1.99
CDX2Q99626 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC2.61□□□□□ -1.99
CDX2Q99626 SNORD39.3-201ENST00000584451 71 ntBASIC2.61□□□□□ -1.99
CDX2Q99626 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC2.61□□□□□ -1.99
CDX2Q99626 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC2.61□□□□□ -1.99
CDX2Q99626 AC090116.1-201ENST00000615679 446 ntBASIC2.61□□□□□ -1.99
CDX2Q99626 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC2.61□□□□□ -1.99
CDX2Q99626 AC078880.5-201ENST00000617845 421 ntBASIC2.61□□□□□ -1.99
CDX2Q99626 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC2.61□□□□□ -1.99
CDX2Q99626 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC2.61□□□□□ -1.99
CDX2Q99626 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.61□□□□□ -1.99
CDX2Q99626 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CDX2Q99626 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CDX2Q99626 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CDX2Q99626 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
CDX2Q99626 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.6□□□□□ -1.99
CDX2Q99626 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.6□□□□□ -1.99
CDX2Q99626 Y_RNA.116-201ENST00000363292 103 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CDX2Q99626 U6.112-201ENST00000384129 70 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 RNU6-1181P-201ENST00000384191 106 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 RPL21P3-201ENST00000395517 478 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 AC092638.1-201ENST00000411966 1275 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 FCF1P2-201ENST00000415284 583 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 AC245054.2-201ENST00000415639 319 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC2.6□□□□□ -1.99
CDX2Q99626 AC104332.2-201ENST00000429959 156 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 UBE2V1P6-201ENST00000430840 422 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 AC234064.1-201ENST00000436312 247 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 RPL7P54-201ENST00000438336 674 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 AC004022.1-201ENST00000447766 1066 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC2.6□□□□□ -1.99
CDX2Q99626 XACT-201ENST00000468762 497 ntTSL 5 BASIC2.6□□□□□ -1.99
CDX2Q99626 AC093278.1-201ENST00000494700 600 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 AC048346.1-201ENST00000510247 144 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 AP003355.1-201ENST00000518956 587 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 AP004371.1-201ENST00000525240 214 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC2.6□□□□□ -1.99
CDX2Q99626 AP003385.6-201ENST00000531603 374 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC2.6□□□□□ -1.99
CDX2Q99626 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CDX2Q99626 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.6□□□□□ -1.99
CDX2Q99626 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.6□□□□□ -1.99
CDX2Q99626 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC2.6□□□□□ -1.99
CDX2Q99626 SNORD84-203ENST00000584275 78 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 AL009028.1-201ENST00000604895 802 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 RPL21P136-201ENST00000605378 396 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 AC103810.6-201ENST00000606708 136 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 AC092953.2-201ENST00000608000 699 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 AC092574.1-201ENST00000609771 420 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 AL590282.1-201ENST00000610379 1136 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CDX2Q99626 MIR8070-201ENST00000616510 88 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 AC068831.7-201ENST00000616954 363 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 U73479.1-201ENST00000618062 168 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 AC090617.7-201ENST00000623952 126 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 OR1S1-201ENST00000624470 978 ntBASIC2.6□□□□□ -1.99
CDX2Q99626 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC2.6□□□□□ -1.99
CDX2Q99626 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
CDX2Q99626 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CDX2Q99626 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CDX2Q99626 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
CDX2Q99626 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
CDX2Q99626 RNU6-50P-201ENST00000362356 103 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 RNU6-582P-201ENST00000362989 107 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 RNU5B-1-201ENST00000363286 116 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 RNU6-839P-201ENST00000363347 108 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 RNU6-263P-201ENST00000363811 107 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 Y_RNA.493-201ENST00000384422 102 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 MIR217-201ENST00000384817 110 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 RPL31P1-201ENST00000398116 372 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 AL591034.1-201ENST00000407447 340 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 RN7SKP32-201ENST00000410167 303 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC2.59□□□□□ -1.99
CDX2Q99626 OFD1P2Y-201ENST00000421895 1149 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.59□□□□□ -1.99
CDX2Q99626 BLOC1S2P1-201ENST00000428431 301 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 AC108667.1-201ENST00000428618 249 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC2.59□□□□□ -1.99
CDX2Q99626 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.59□□□□□ -1.99
CDX2Q99626 AC009969.1-201ENST00000438726 172 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 AC104389.3-201ENST00000445629 235 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC2.59□□□□□ -1.99
CDX2Q99626 RPL21P41-201ENST00000459863 264 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC2.59□□□□□ -1.99
CDX2Q99626 PABPC1P3-201ENST00000469174 459 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 AC072039.1-201ENST00000477611 581 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC2.59□□□□□ -1.99
CDX2Q99626 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC2.59□□□□□ -1.99
CDX2Q99626 POU5F1P7-201ENST00000508759 541 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC2.59□□□□□ -1.99
CDX2Q99626 RNU5A-7P-201ENST00000515979 116 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC2.59□□□□□ -1.99
CDX2Q99626 HMGB1P1-201ENST00000522557 636 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.59□□□□□ -1.99
CDX2Q99626 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.59□□□□□ -1.99
CDX2Q99626 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC2.59□□□□□ -1.99
CDX2Q99626 AC093510.2-201ENST00000562820 896 ntBASIC2.59□□□□□ -1.99
CDX2Q99626 MIR3605-201ENST00000583214 100 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms