Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
UBE3DQ7Z6J8 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 AC026523.2-201ENST00000625039 7739 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 PCAT14-202ENST00000627127 3935 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 SNURFL-201ENST00000309296 343 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 U8.4-201ENST00000363626 134 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 RN7SKP113-201ENST00000363891 295 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 Y_RNA.307-201ENST00000365022 117 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 RHOT1P2-201ENST00000366423 333 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 Y_RNA.552-201ENST00000384665 112 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 TANK-203ENST00000402568 878 ntTSL 5 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 CYCSP10-201ENST00000417973 294 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 RPL23AP50-201ENST00000434149 455 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 PTMAP6-201ENST00000439110 327 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 RPL34P20-201ENST00000442771 351 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 AL583843.1-201ENST00000456070 346 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 RN7SL441P-201ENST00000492388 296 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 RNA5SP384-201ENST00000516615 116 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 RN7SKP60-201ENST00000516985 239 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 APPL2-203ENST00000546731 684 ntTSL 2 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 AC105254.2-201ENST00000603636 436 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 AL591926.8-201ENST00000616876 211 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 AC114947.2-201ENST00000565748 2125 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 HSPA8P4-201ENST00000511877 1920 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 EOGT-210ENST00000615922 1931 ntBASIC4.82□□□□□ -1.64
UBE3DQ7Z6J8 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 AC104260.2-201ENST00000623551 3497 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 Y_RNA.276-201ENST00000364732 109 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 SNORA23-201ENST00000365128 182 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 RNU6-596P-201ENST00000365395 98 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 Y_RNA.473-201ENST00000384333 102 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 RNU6-45P-201ENST00000384471 107 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 AL590704.1-201ENST00000402856 794 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 SNORA77-201ENST00000408716 125 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 AC099677.1-201ENST00000420575 175 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 AL450023.3-201ENST00000440592 271 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 EIF4A1P11-201ENST00000451239 222 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 AC091180.1-201ENST00000462104 372 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 RN7SL799P-201ENST00000475891 298 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 AP000926.1-201ENST00000479573 241 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 AC068781.1-201ENST00000488231 618 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 RN7SL629P-201ENST00000489622 285 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 RNU6-408P-201ENST00000515910 100 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 RNU2-53P-201ENST00000516257 147 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 RNU6-388P-201ENST00000517012 105 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 RNU6-389P-201ENST00000517048 105 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 AC012339.2-201ENST00000523996 453 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 AC025423.5-201ENST00000550230 219 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 NDUFB4P11-201ENST00000560510 395 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 MIR3691-201ENST00000578066 90 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 AC006116.3-201ENST00000592968 361 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 C4BPAP1-201ENST00000415474 1893 ntBASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
UBE3DQ7Z6J8 EIF2AP4-201ENST00000424793 1781 ntBASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 291.2 ms