Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.57□□□□□ -1.84
USP43Q70EL4 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.57□□□□□ -1.84
USP43Q70EL4 AL161729.4-201ENST00000604650 476 ntBASIC3.57□□□□□ -1.84
USP43Q70EL4 AC010680.4-201ENST00000605334 543 ntBASIC3.57□□□□□ -1.84
USP43Q70EL4 AC136475.10-201ENST00000620253 385 ntBASIC3.57□□□□□ -1.84
USP43Q70EL4 AL160413.1-201ENST00000622780 310 ntBASIC3.57□□□□□ -1.84
USP43Q70EL4 MIR6863-201ENST00000636112 90 ntBASIC3.57□□□□□ -1.84
USP43Q70EL4 CRYM-AS1-204ENST00000637983 556 ntBASIC3.57□□□□□ -1.84
USP43Q70EL4 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.57□□□□□ -1.84
USP43Q70EL4 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
USP43Q70EL4 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.56□□□□□ -1.84
USP43Q70EL4 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
USP43Q70EL4 AL161912.2-201ENST00000565707 3007 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.56□□□□□ -1.84
USP43Q70EL4 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
USP43Q70EL4 AL122126.1-201ENST00000546905 1318 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 SNORA63C-201ENST00000364578 129 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 RNA5SP167-201ENST00000365461 116 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
USP43Q70EL4 MT-TR-201ENST00000387439 65 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 AL583835.1-201ENST00000399570 407 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 AL590290.1-201ENST00000405336 380 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 FCF1P2-201ENST00000415284 583 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 RPS3AP9-201ENST00000417027 792 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 USP9YP13-201ENST00000417797 480 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 AC092634.6-201ENST00000418558 192 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.56□□□□□ -1.84
USP43Q70EL4 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.56□□□□□ -1.84
USP43Q70EL4 RPS15AP6-201ENST00000420703 385 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 AL953862.1-201ENST00000423016 168 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 AC007742.1-201ENST00000425789 329 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
USP43Q70EL4 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.56□□□□□ -1.84
USP43Q70EL4 ELOCP26-201ENST00000436067 329 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 AL831737.1-201ENST00000441288 271 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 RPS29P31-201ENST00000446147 164 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 AC022364.2-201ENST00000457963 554 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 AC091564.1-201ENST00000464563 479 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 AC022034.3-201ENST00000471393 478 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 AC087312.1-201ENST00000471411 480 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.56□□□□□ -1.84
USP43Q70EL4 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
USP43Q70EL4 IGKV2-36-201ENST00000519999 223 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 AC027309.2-201ENST00000520566 192 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.56□□□□□ -1.84
USP43Q70EL4 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.56□□□□□ -1.84
USP43Q70EL4 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.56□□□□□ -1.84
USP43Q70EL4 OR6C73P-201ENST00000546432 358 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 CYCSP2-201ENST00000558168 301 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 HMGB1P33-201ENST00000563485 527 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.56□□□□□ -1.84
USP43Q70EL4 MIR4286-201ENST00000580651 93 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 AC006130.2-201ENST00000586202 326 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.56□□□□□ -1.84
USP43Q70EL4 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.56□□□□□ -1.84
USP43Q70EL4 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.56□□□□□ -1.84
USP43Q70EL4 RNU6ATAC35P-201ENST00000609276 444 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 AC099669.2-201ENST00000616549 437 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.56□□□□□ -1.84
USP43Q70EL4 AL139089.1-201ENST00000620372 975 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.56□□□□□ -1.84
USP43Q70EL4 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.56□□□□□ -1.84
USP43Q70EL4 AC026634.1-201ENST00000634369 198 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 U6.98-201ENST00000637157 84 ntBASIC3.56□□□□□ -1.84
USP43Q70EL4 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
USP43Q70EL4 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
USP43Q70EL4 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.56□□□□□ -1.84
USP43Q70EL4 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.56□□□□□ -1.84
USP43Q70EL4 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
USP43Q70EL4 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
USP43Q70EL4 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.56□□□□□ -1.84
USP43Q70EL4 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.56□□□□□ -1.84
USP43Q70EL4 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
USP43Q70EL4 LARP1BP1-201ENST00000506036 1359 ntBASIC3.55□□□□□ -1.84
USP43Q70EL4 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
USP43Q70EL4 GDI2P1-201ENST00000429312 1336 ntBASIC3.55□□□□□ -1.84
USP43Q70EL4 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC3.55□□□□□ -1.84
USP43Q70EL4 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
USP43Q70EL4 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
USP43Q70EL4 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
USP43Q70EL4 MIR331-201ENST00000362302 94 ntBASIC3.55□□□□□ -1.84
USP43Q70EL4 Y_RNA.25-201ENST00000362528 102 ntBASIC3.55□□□□□ -1.84
USP43Q70EL4 SNORA62.3-201ENST00000365110 153 ntBASIC3.55□□□□□ -1.84
USP43Q70EL4 MIR506-201ENST00000384998 124 ntBASIC3.55□□□□□ -1.84
USP43Q70EL4 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
USP43Q70EL4 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
USP43Q70EL4 AL391417.1-201ENST00000404100 426 ntBASIC3.55□□□□□ -1.84
USP43Q70EL4 MTHFD2P2-201ENST00000407725 247 ntBASIC3.55□□□□□ -1.84
USP43Q70EL4 RN7SKP202-201ENST00000410439 330 ntBASIC3.55□□□□□ -1.84
USP43Q70EL4 AL136133.1-201ENST00000413694 376 ntBASIC3.55□□□□□ -1.84
USP43Q70EL4 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC3.55□□□□□ -1.84
USP43Q70EL4 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC3.55□□□□□ -1.84
USP43Q70EL4 AL356583.2-201ENST00000426536 280 ntBASIC3.55□□□□□ -1.84
USP43Q70EL4 AL451062.2-201ENST00000427515 271 ntBASIC3.55□□□□□ -1.84
USP43Q70EL4 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.55□□□□□ -1.84
USP43Q70EL4 AC108059.2-201ENST00000434626 151 ntBASIC3.55□□□□□ -1.84
USP43Q70EL4 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.55□□□□□ -1.84
USP43Q70EL4 HMGB1P37-201ENST00000439613 609 ntBASIC3.55□□□□□ -1.84
USP43Q70EL4 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.55□□□□□ -1.84
USP43Q70EL4 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms