Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 Y_RNA.255-201ENST00000364581 97 ntBASIC4.46□□□□□ -1.7
USP39Q53GS9 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
USP39Q53GS9 RN7SKP202-201ENST00000410439 330 ntBASIC4.46□□□□□ -1.7
USP39Q53GS9 VDAC1P9-201ENST00000412766 841 ntBASIC4.46□□□□□ -1.7
USP39Q53GS9 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.46□□□□□ -1.7
USP39Q53GS9 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.46□□□□□ -1.7
USP39Q53GS9 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
USP39Q53GS9 AC026410.2-201ENST00000460281 156 ntBASIC4.46□□□□□ -1.7
USP39Q53GS9 MTCO2P29-201ENST00000465212 189 ntBASIC4.46□□□□□ -1.7
USP39Q53GS9 RN7SL604P-201ENST00000492589 296 ntBASIC4.46□□□□□ -1.7
USP39Q53GS9 CYCSP28-201ENST00000534284 321 ntBASIC4.46□□□□□ -1.7
USP39Q53GS9 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.46□□□□□ -1.7
USP39Q53GS9 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC4.46□□□□□ -1.7
USP39Q53GS9 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC4.46□□□□□ -1.7
USP39Q53GS9 AL627309.6-201ENST00000606857 840 ntBASIC4.46□□□□□ -1.7
USP39Q53GS9 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
USP39Q53GS9 AL078596.1-201ENST00000624856 447 ntBASIC4.46□□□□□ -1.7
USP39Q53GS9 AC140479.6-201ENST00000633535 357 ntBASIC4.46□□□□□ -1.7
USP39Q53GS9 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC4.46□□□□□ -1.7
USP39Q53GS9 U6.101-201ENST00000637707 76 ntBASIC4.46□□□□□ -1.7
USP39Q53GS9 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
USP39Q53GS9 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
USP39Q53GS9 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
USP39Q53GS9 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
USP39Q53GS9 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
USP39Q53GS9 Y_RNA.395-201ENST00000383945 109 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 RNU6-831P-201ENST00000384548 107 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 MIR3065-201ENST00000390137 79 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
USP39Q53GS9 Y_RNA.615-201ENST00000410769 117 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC4.45□□□□□ -1.7
USP39Q53GS9 AC113618.1-201ENST00000416747 285 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 AC234782.4-201ENST00000417646 1048 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 RPS12P5-201ENST00000423449 371 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC4.45□□□□□ -1.7
USP39Q53GS9 GPR143P-201ENST00000434155 205 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 AL645939.1-201ENST00000453429 797 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 RNU7-63P-201ENST00000459054 62 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 AC078785.3-201ENST00000476607 425 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.45□□□□□ -1.7
USP39Q53GS9 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC4.45□□□□□ -1.7
USP39Q53GS9 AP002812.1-201ENST00000495378 474 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.45□□□□□ -1.7
USP39Q53GS9 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC4.45□□□□□ -1.7
USP39Q53GS9 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.45□□□□□ -1.7
USP39Q53GS9 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
USP39Q53GS9 TTC39CP1-201ENST00000512513 755 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.45□□□□□ -1.7
USP39Q53GS9 Y_RNA.718-201ENST00000517110 102 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 TVP23BP1-201ENST00000557500 617 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 AC006270.2-201ENST00000578523 652 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 MIR4429-201ENST00000580105 73 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 AC100830.2-201ENST00000581636 240 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
USP39Q53GS9 AL355472.4-201ENST00000610233 626 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
USP39Q53GS9 SNX18P1Y-201ENST00000616231 511 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC4.45□□□□□ -1.7
USP39Q53GS9 MTND4LP32-201ENST00000636111 270 ntBASIC4.45□□□□□ -1.7
USP39Q53GS9 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.45□□□□□ -1.7
USP39Q53GS9 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
USP39Q53GS9 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
USP39Q53GS9 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.45□□□□□ -1.7
USP39Q53GS9 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
USP39Q53GS9 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
USP39Q53GS9 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.45□□□□□ -1.7
USP39Q53GS9 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
USP39Q53GS9 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
USP39Q53GS9 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
USP39Q53GS9 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
USP39Q53GS9 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
USP39Q53GS9 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
USP39Q53GS9 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
USP39Q53GS9 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
USP39Q53GS9 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.44□□□□□ -1.7
USP39Q53GS9 LARP1BP1-201ENST00000506036 1359 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.44□□□□□ -1.7
USP39Q53GS9 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
USP39Q53GS9 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
USP39Q53GS9 Y_RNA.231-201ENST00000364358 102 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 RNU6-744P-201ENST00000365557 107 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 SNORA22B-201ENST00000383876 138 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 RNU6-1316P-201ENST00000384242 108 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 RNU6-331P-201ENST00000384724 107 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 AL356057.3-201ENST00000402607 340 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 AL078604.1-201ENST00000404609 466 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 RNU2-39P-201ENST00000410604 198 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.44□□□□□ -1.7
USP39Q53GS9 AC127526.1-201ENST00000417526 366 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC4.44□□□□□ -1.7
USP39Q53GS9 RPL21P91-201ENST00000429231 479 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 AL356010.1-201ENST00000456364 102 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 PPP1R2P5-201ENST00000457256 603 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC4.44□□□□□ -1.7
USP39Q53GS9 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.44□□□□□ -1.7
USP39Q53GS9 AL132838.2-201ENST00000492041 314 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 AC021146.3-201ENST00000511911 260 ntBASIC4.44□□□□□ -1.7
USP39Q53GS9 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.44□□□□□ -1.7
USP39Q53GS9 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC4.44□□□□□ -1.7
USP39Q53GS9 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms