Protein–RNA interactions for Protein: Q15475

SIX1, Homeobox protein SIX1, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX1Q15475 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
SIX1Q15475 RNU6-343P-201ENST00000364709 104 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 RPL17P50-201ENST00000396131 546 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 AL031679.1-201ENST00000400616 525 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 AL590004.2-201ENST00000404787 371 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 U3.42-201ENST00000408746 214 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.1□□□□□ -1.91
SIX1Q15475 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX1Q15475 AL451074.5-201ENST00000415894 435 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX1Q15475 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX1Q15475 MTCYBP39-201ENST00000437562 491 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX1Q15475 HSPE1P28-201ENST00000443139 211 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX1Q15475 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX1Q15475 RPL37P4-201ENST00000448908 268 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 AL445669.2-201ENST00000454425 421 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 snoU13.3-201ENST00000459441 104 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 AC117440.1-201ENST00000474107 571 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 RPS3AP43-201ENST00000479743 781 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX1Q15475 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.1□□□□□ -1.91
SIX1Q15475 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.1□□□□□ -1.91
SIX1Q15475 AC093809.1-201ENST00000509155 340 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.1□□□□□ -1.91
SIX1Q15475 RNA5SP76-201ENST00000516277 87 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 Vault.1-201ENST00000516474 102 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 COX6CP8-201ENST00000522620 226 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 OR6C73P-201ENST00000546432 358 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.1□□□□□ -1.91
SIX1Q15475 AC107954.1-201ENST00000565906 727 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 AC011260.1-201ENST00000578420 472 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC3.1□□□□□ -1.91
SIX1Q15475 AL606834.2-201ENST00000602954 668 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 AL160281.1-201ENST00000605307 311 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX1Q15475 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.1□□□□□ -1.91
SIX1Q15475 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 MIR7112-201ENST00000616126 65 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 U73479.1-201ENST00000618062 168 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 AC048344.4-201ENST00000619744 527 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 AL356596.1-201ENST00000624230 379 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SIX1Q15475 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.1□□□□□ -1.91
SIX1Q15475 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SIX1Q15475 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
SIX1Q15475 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
SIX1Q15475 AL353746.1-201ENST00000566293 6881 ntBASIC3.1□□□□□ -1.91
SIX1Q15475 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.1□□□□□ -1.91
SIX1Q15475 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.09□□□□□ -1.91
SIX1Q15475 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SIX1Q15475 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.09□□□□□ -1.91
SIX1Q15475 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.09□□□□□ -1.91
SIX1Q15475 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.09□□□□□ -1.91
SIX1Q15475 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
SIX1Q15475 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SIX1Q15475 RNU6-777P-201ENST00000364265 104 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 RNU6-660P-201ENST00000364566 109 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.09□□□□□ -1.91
SIX1Q15475 Y_RNA.560-201ENST00000384689 102 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 AL031577.2-201ENST00000404133 280 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 RNU4-47P-201ENST00000410876 114 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 RNA5SP120-201ENST00000410900 112 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.09□□□□□ -1.91
SIX1Q15475 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.09□□□□□ -1.91
SIX1Q15475 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.09□□□□□ -1.91
SIX1Q15475 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC3.09□□□□□ -1.91
SIX1Q15475 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.09□□□□□ -1.91
SIX1Q15475 MTCO2P5-201ENST00000422621 426 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 AC019178.2-201ENST00000423595 505 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.09□□□□□ -1.91
SIX1Q15475 AC006548.1-201ENST00000427470 102 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.09□□□□□ -1.91
SIX1Q15475 AL590233.1-201ENST00000430017 456 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 AL117351.1-201ENST00000438864 766 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 GAPDHP27-201ENST00000447427 1020 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 BX322784.1-201ENST00000455793 1077 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 BX510359.1-201ENST00000456973 237 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 MTND3P7-201ENST00000474435 343 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC3.09□□□□□ -1.91
SIX1Q15475 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.09□□□□□ -1.91
SIX1Q15475 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.09□□□□□ -1.91
SIX1Q15475 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.09□□□□□ -1.91
SIX1Q15475 AL356057.1-201ENST00000533798 831 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 AKIRIN1P1-201ENST00000547384 544 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC3.09□□□□□ -1.91
SIX1Q15475 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.09□□□□□ -1.91
SIX1Q15475 AC034105.3-201ENST00000565294 442 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.09□□□□□ -1.91
SIX1Q15475 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.09□□□□□ -1.91
SIX1Q15475 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.09□□□□□ -1.91
SIX1Q15475 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.09□□□□□ -1.91
SIX1Q15475 AC007687.1-201ENST00000602704 304 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 AC006329.2-201ENST00000611491 394 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 CR381572.1-201ENST00000625098 102 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 AC084035.1-201ENST00000634543 607 ntBASIC3.09□□□□□ -1.91
SIX1Q15475 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.09□□□□□ -1.92
SIX1Q15475 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms