Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 U73479.1-201ENST00000618062 168 ntBASIC4.73□□□□□ -1.65
RNF4P78317 SMG1P6-201ENST00000532337 2930 ntBASIC4.73□□□□□ -1.65
RNF4P78317 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
RNF4P78317 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.73□□□□□ -1.65
RNF4P78317 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.73□□□□□ -1.65
RNF4P78317 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC4.73□□□□□ -1.65
RNF4P78317 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
RNF4P78317 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
RNF4P78317 AL450345.1-202ENST00000605741 3881 ntBASIC4.72□□□□□ -1.65
RNF4P78317 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
RNF4P78317 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
RNF4P78317 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.72□□□□□ -1.65
RNF4P78317 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
RNF4P78317 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.72□□□□□ -1.65
RNF4P78317 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.72□□□□□ -1.65
RNF4P78317 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.72□□□□□ -1.65
RNF4P78317 AL592182.3-201ENST00000642132 3304 ntBASIC4.72□□□□□ -1.65
RNF4P78317 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
RNF4P78317 RNA5SP455-201ENST00000365190 119 ntBASIC4.72□□□□□ -1.65
RNF4P78317 Y_RNA.364-201ENST00000365532 101 ntBASIC4.72□□□□□ -1.65
RNF4P78317 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
RNF4P78317 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
RNF4P78317 SNORA2.3-201ENST00000383920 135 ntBASIC4.72□□□□□ -1.65
RNF4P78317 RNU6-128P-201ENST00000383976 107 ntBASIC4.72□□□□□ -1.65
RNF4P78317 RNU6-1032P-201ENST00000384100 107 ntBASIC4.72□□□□□ -1.65
RNF4P78317 Y_RNA.463-201ENST00000384271 102 ntBASIC4.72□□□□□ -1.65
RNF4P78317 MIR548F4-201ENST00000408515 105 ntBASIC4.72□□□□□ -1.65
RNF4P78317 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
RNF4P78317 EIF4A1P3-201ENST00000411521 244 ntBASIC4.72□□□□□ -1.65
RNF4P78317 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC4.72□□□□□ -1.65
RNF4P78317 PPP1R11P2-201ENST00000423543 382 ntBASIC4.72□□□□□ -1.65
RNF4P78317 MTCYBP9-201ENST00000431021 303 ntBASIC4.72□□□□□ -1.65
RNF4P78317 AC236972.1-201ENST00000433225 199 ntBASIC4.72□□□□□ -1.65
RNF4P78317 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.72□□□□□ -1.65
RNF4P78317 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.72□□□□□ -1.65
RNF4P78317 RN7SL244P-201ENST00000493405 297 ntBASIC4.72□□□□□ -1.65
RNF4P78317 RNU6-352P-201ENST00000516908 107 ntBASIC4.72□□□□□ -1.65
RNF4P78317 RNU6-840P-201ENST00000517275 65 ntBASIC4.72□□□□□ -1.65
RNF4P78317 AC008489.1-201ENST00000524271 483 ntBASIC4.72□□□□□ -1.65
RNF4P78317 AC025423.5-201ENST00000550230 219 ntBASIC4.72□□□□□ -1.65
RNF4P78317 MTCO3P23-201ENST00000561363 289 ntBASIC4.72□□□□□ -1.65
RNF4P78317 AC008269.2-201ENST00000561915 1105 ntBASIC4.72□□□□□ -1.65
RNF4P78317 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC4.72□□□□□ -1.65
RNF4P78317 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.72□□□□□ -1.65
RNF4P78317 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.72□□□□□ -1.65
RNF4P78317 AC104763.2-201ENST00000604179 382 ntBASIC4.72□□□□□ -1.65
RNF4P78317 AC090425.1-201ENST00000610007 140 ntBASIC4.72□□□□□ -1.65
RNF4P78317 AC006157.1-201ENST00000611750 366 ntBASIC4.72□□□□□ -1.65
RNF4P78317 EIF3FP1-201ENST00000613970 806 ntBASIC4.72□□□□□ -1.65
RNF4P78317 PLCE1P1-201ENST00000622094 305 ntBASIC4.72□□□□□ -1.65
RNF4P78317 AC022418.1-201ENST00000624118 445 ntBASIC4.72□□□□□ -1.65
RNF4P78317 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.72□□□□□ -1.65
RNF4P78317 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
RNF4P78317 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
RNF4P78317 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
RNF4P78317 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
RNF4P78317 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
RNF4P78317 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
RNF4P78317 CDC27P3-201ENST00000635418 1910 ntBASIC4.72□□□□□ -1.65
RNF4P78317 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
RNF4P78317 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.65
RNF4P78317 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
RNF4P78317 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
RNF4P78317 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
RNF4P78317 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.71□□□□□ -1.66
RNF4P78317 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.71□□□□□ -1.66
RNF4P78317 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.71□□□□□ -1.66
RNF4P78317 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
RNF4P78317 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
RNF4P78317 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
RNF4P78317 RNU6-95P-201ENST00000384697 107 ntBASIC4.71□□□□□ -1.66
RNF4P78317 RNU6-331P-201ENST00000384724 107 ntBASIC4.71□□□□□ -1.66
RNF4P78317 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.71□□□□□ -1.66
RNF4P78317 snoU13.3-201ENST00000459441 104 ntBASIC4.71□□□□□ -1.66
RNF4P78317 AC091180.1-201ENST00000462104 372 ntBASIC4.71□□□□□ -1.66
RNF4P78317 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC4.71□□□□□ -1.66
RNF4P78317 RN7SL97P-201ENST00000486780 299 ntBASIC4.71□□□□□ -1.66
RNF4P78317 COX6B1P5-201ENST00000509843 249 ntBASIC4.71□□□□□ -1.66
RNF4P78317 RNU6-764P-201ENST00000516396 105 ntBASIC4.71□□□□□ -1.66
RNF4P78317 OR4H12P-201ENST00000556269 907 ntBASIC4.71□□□□□ -1.66
RNF4P78317 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.71□□□□□ -1.66
RNF4P78317 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.71□□□□□ -1.66
RNF4P78317 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.71□□□□□ -1.66
RNF4P78317 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC4.71□□□□□ -1.66
RNF4P78317 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.71□□□□□ -1.66
RNF4P78317 AC018462.2-201ENST00000605375 395 ntBASIC4.71□□□□□ -1.66
RNF4P78317 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
RNF4P78317 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.71□□□□□ -1.66
RNF4P78317 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
RNF4P78317 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
RNF4P78317 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.71□□□□□ -1.66
RNF4P78317 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
RNF4P78317 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
RNF4P78317 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.71□□□□□ -1.66
RNF4P78317 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.71□□□□□ -1.66
RNF4P78317 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
RNF4P78317 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
RNF4P78317 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.71□□□□□ -1.66
RNF4P78317 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.71□□□□□ -1.66
RNF4P78317 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms