Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CEACAMP6-201ENST00000452007 574 ntBASIC5.12□□□□□ -1.59
LIG3P49916 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC5.12□□□□□ -1.59
LIG3P49916 Y_RNA.653-201ENST00000459091 95 ntBASIC5.12□□□□□ -1.59
LIG3P49916 AC007686.1-201ENST00000488511 463 ntBASIC5.12□□□□□ -1.59
LIG3P49916 ENPP7P9-201ENST00000514456 627 ntBASIC5.12□□□□□ -1.59
LIG3P49916 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC5.12□□□□□ -1.59
LIG3P49916 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC5.12□□□□□ -1.59
LIG3P49916 RPL23AP53-201ENST00000521854 457 ntBASIC5.12□□□□□ -1.59
LIG3P49916 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC5.12□□□□□ -1.59
LIG3P49916 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.12□□□□□ -1.59
LIG3P49916 MIR4646-201ENST00000580775 63 ntBASIC5.12□□□□□ -1.59
LIG3P49916 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC5.12□□□□□ -1.59
LIG3P49916 AC174048.1-201ENST00000603389 144 ntBASIC5.12□□□□□ -1.59
LIG3P49916 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC5.12□□□□□ -1.59
LIG3P49916 AP005432.2-201ENST00000608162 586 ntBASIC5.12□□□□□ -1.59
LIG3P49916 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC5.12□□□□□ -1.59
LIG3P49916 DUSP12P1-201ENST00000612874 516 ntBASIC5.12□□□□□ -1.59
LIG3P49916 EIF3FP1-201ENST00000613970 806 ntBASIC5.12□□□□□ -1.59
LIG3P49916 AL450472.3-201ENST00000615578 367 ntBASIC5.12□□□□□ -1.59
LIG3P49916 AC008121.3-201ENST00000618726 433 ntBASIC5.12□□□□□ -1.59
LIG3P49916 MIR6730-201ENST00000622213 67 ntBASIC5.12□□□□□ -1.59
LIG3P49916 AC244517.12-201ENST00000623581 663 ntBASIC5.12□□□□□ -1.59
LIG3P49916 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
LIG3P49916 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
LIG3P49916 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.12□□□□□ -1.59
LIG3P49916 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
LIG3P49916 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
LIG3P49916 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
LIG3P49916 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC5.11□□□□□ -1.59
LIG3P49916 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
LIG3P49916 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC5.11□□□□□ -1.59
LIG3P49916 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LIG3P49916 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
LIG3P49916 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LIG3P49916 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LIG3P49916 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
LIG3P49916 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
LIG3P49916 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
LIG3P49916 RNU6-190P-201ENST00000384154 102 ntBASIC5.11□□□□□ -1.59
LIG3P49916 Y_RNA.482-201ENST00000384377 111 ntBASIC5.11□□□□□ -1.59
LIG3P49916 SNORD70.1-201ENST00000391007 85 ntBASIC5.11□□□□□ -1.59
LIG3P49916 AL360182.1-201ENST00000397433 468 ntBASIC5.11□□□□□ -1.59
LIG3P49916 AP000580.1-201ENST00000404439 358 ntBASIC5.11□□□□□ -1.59
LIG3P49916 RNU2-43P-201ENST00000410306 190 ntBASIC5.11□□□□□ -1.59
LIG3P49916 AC016769.2-201ENST00000414815 475 ntBASIC5.11□□□□□ -1.59
LIG3P49916 AL139095.3-201ENST00000419672 1203 ntBASIC5.11□□□□□ -1.59
LIG3P49916 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.11□□□□□ -1.59
LIG3P49916 Z80107.2-201ENST00000445127 392 ntBASIC5.11□□□□□ -1.59
LIG3P49916 MTND1P17-201ENST00000448961 204 ntBASIC5.11□□□□□ -1.59
LIG3P49916 AL162388.1-201ENST00000450912 352 ntBASIC5.11□□□□□ -1.59
LIG3P49916 RN7SL443P-201ENST00000464331 290 ntBASIC5.11□□□□□ -1.59
LIG3P49916 DYNLL1P5-201ENST00000467158 270 ntBASIC5.11□□□□□ -1.59
LIG3P49916 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.11□□□□□ -1.59
LIG3P49916 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC5.11□□□□□ -1.59
LIG3P49916 AC008694.2-201ENST00000517591 306 ntBASIC5.11□□□□□ -1.59
LIG3P49916 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC5.11□□□□□ -1.59
LIG3P49916 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC5.11□□□□□ -1.59
LIG3P49916 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.11□□□□□ -1.59
LIG3P49916 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC5.11□□□□□ -1.59
LIG3P49916 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5.11□□□□□ -1.59
LIG3P49916 AL670379.10-201ENST00000604330 253 ntBASIC5.11□□□□□ -1.59
LIG3P49916 IGHV3-29-201ENST00000604817 344 ntBASIC5.11□□□□□ -1.59
LIG3P49916 AL670379.9-201ENST00000605428 253 ntBASIC5.11□□□□□ -1.59
LIG3P49916 AC133104.2-201ENST00000615272 193 ntBASIC5.11□□□□□ -1.59
LIG3P49916 AL359547.2-201ENST00000615810 418 ntBASIC5.11□□□□□ -1.59
LIG3P49916 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.11□□□□□ -1.59
LIG3P49916 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.11□□□□□ -1.59
LIG3P49916 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.11□□□□□ -1.59
LIG3P49916 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LIG3P49916 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
LIG3P49916 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LIG3P49916 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
LIG3P49916 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
LIG3P49916 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.11□□□□□ -1.59
LIG3P49916 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.11□□□□□ -1.59
LIG3P49916 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.11□□□□□ -1.59
LIG3P49916 AC026951.1-201ENST00000559530 2459 ntBASIC5.11□□□□□ -1.59
LIG3P49916 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
LIG3P49916 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
LIG3P49916 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
LIG3P49916 RNU6-1188P-201ENST00000363795 107 ntBASIC5.1□□□□□ -1.59
LIG3P49916 RN7SKP113-201ENST00000363891 295 ntBASIC5.1□□□□□ -1.59
LIG3P49916 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
LIG3P49916 SNORD116-11-201ENST00000383882 92 ntBASIC5.1□□□□□ -1.59
LIG3P49916 RNU6-639P-201ENST00000384074 107 ntBASIC5.1□□□□□ -1.59
LIG3P49916 RNU6-356P-201ENST00000384140 107 ntBASIC5.1□□□□□ -1.59
LIG3P49916 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
LIG3P49916 CKS1BP6-201ENST00000424932 240 ntBASIC5.1□□□□□ -1.59
LIG3P49916 AL590762.4-201ENST00000425885 253 ntBASIC5.1□□□□□ -1.59
LIG3P49916 RPS27P18-201ENST00000431701 247 ntBASIC5.1□□□□□ -1.59
LIG3P49916 AC090774.1-201ENST00000435925 246 ntBASIC5.1□□□□□ -1.59
LIG3P49916 RPL34P20-201ENST00000442771 351 ntBASIC5.1□□□□□ -1.59
LIG3P49916 NEFMP1-201ENST00000443423 1006 ntBASIC5.1□□□□□ -1.59
LIG3P49916 IFNWP4-201ENST00000453148 294 ntBASIC5.1□□□□□ -1.59
LIG3P49916 snoU13.20-201ENST00000459180 104 ntBASIC5.1□□□□□ -1.59
LIG3P49916 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC5.1□□□□□ -1.59
LIG3P49916 RN7SL244P-201ENST00000493405 297 ntBASIC5.1□□□□□ -1.59
LIG3P49916 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC5.1□□□□□ -1.59
LIG3P49916 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC5.1□□□□□ -1.59
LIG3P49916 SNRPGP18-201ENST00000553000 214 ntBASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms