Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SNORA31.24-201ENST00000517232 57 ntBASIC2.56□□□□□ -2
CUX1P39880 AC084757.1-201ENST00000559987 490 ntBASIC2.56□□□□□ -2
CUX1P39880 AL133393.1-201ENST00000603277 287 ntBASIC2.56□□□□□ -2
CUX1P39880 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.56□□□□□ -2
CUX1P39880 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC2.56□□□□□ -2
CUX1P39880 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.56□□□□□ -2
CUX1P39880 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC2.55□□□□□ -2
CUX1P39880 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.55□□□□□ -2
CUX1P39880 AC093536.2-201ENST00000565257 1406 ntBASIC2.55□□□□□ -2
CUX1P39880 Y_RNA.354-201ENST00000365448 111 ntBASIC2.55□□□□□ -2
CUX1P39880 RNU6-1027P-201ENST00000383998 107 ntBASIC2.55□□□□□ -2
CUX1P39880 MIR517C-201ENST00000385103 95 ntBASIC2.55□□□□□ -2
CUX1P39880 SNORA67.6-201ENST00000391093 99 ntBASIC2.55□□□□□ -2
CUX1P39880 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.55□□□□□ -2
CUX1P39880 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC2.55□□□□□ -2
CUX1P39880 AC092155.2-201ENST00000454675 477 ntBASIC2.55□□□□□ -2
CUX1P39880 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.55□□□□□ -2
CUX1P39880 MIR3199-2-201ENST00000636243 86 ntBASIC2.55□□□□□ -2
CUX1P39880 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.55□□□□□ -2
CUX1P39880 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CUX1P39880 MIR96-201ENST00000362288 78 ntBASIC2.54□□□□□ -2
CUX1P39880 SUMO2P12-201ENST00000405924 140 ntBASIC2.54□□□□□ -2
CUX1P39880 RNU6-603P-201ENST00000411403 107 ntBASIC2.54□□□□□ -2
CUX1P39880 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC2.54□□□□□ -2
CUX1P39880 OR51B8P-201ENST00000449892 769 ntBASIC2.54□□□□□ -2
CUX1P39880 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.54□□□□□ -2
CUX1P39880 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC2.54□□□□□ -2
CUX1P39880 RN7SL274P-201ENST00000492268 272 ntBASIC2.54□□□□□ -2
CUX1P39880 AC135721.1-201ENST00000497954 479 ntBASIC2.54□□□□□ -2
CUX1P39880 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.54□□□□□ -2
CUX1P39880 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.54□□□□□ -2
CUX1P39880 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC2.54□□□□□ -2
CUX1P39880 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.54□□□□□ -2
CUX1P39880 MIR4448-201ENST00000584360 86 ntBASIC2.54□□□□□ -2
CUX1P39880 AL078603.1-201ENST00000603824 313 ntBASIC2.54□□□□□ -2
CUX1P39880 XKRY2-202ENST00000623874 1581 ntBASIC2.54□□□□□ -2
CUX1P39880 XKRY-202ENST00000624960 1581 ntBASIC2.54□□□□□ -2
CUX1P39880 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.54□□□□□ -2
CUX1P39880 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2.54□□□□□ -2
CUX1P39880 SNRPEP2-201ENST00000397592 279 ntBASIC2.53□□□□□ -2
CUX1P39880 POLR2J4-204ENST00000418424 324 ntBASIC2.53□□□□□ -2
CUX1P39880 PIGFP3-201ENST00000441918 722 ntBASIC2.53□□□□□ -2
CUX1P39880 CLIC4P1-201ENST00000453177 535 ntBASIC2.53□□□□□ -2
CUX1P39880 ARPC3P2-201ENST00000457786 533 ntBASIC2.53□□□□□ -2
CUX1P39880 MTCO3P44-201ENST00000510977 541 ntBASIC2.53□□□□□ -2
CUX1P39880 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.53□□□□□ -2
CUX1P39880 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.53□□□□□ -2
CUX1P39880 MIR4458-201ENST00000578872 75 ntBASIC2.53□□□□□ -2
CUX1P39880 SEPT7P9-203ENST00000604116 343 ntBASIC2.53□□□□□ -2
CUX1P39880 MIR6734-201ENST00000621166 68 ntBASIC2.53□□□□□ -2
CUX1P39880 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
CUX1P39880 MTCO1P43-201ENST00000431831 488 ntBASIC2.52□□□□□ -2.01
CUX1P39880 RPL21P134-201ENST00000453468 483 ntBASIC2.52□□□□□ -2.01
CUX1P39880 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC2.52□□□□□ -2.01
CUX1P39880 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC2.52□□□□□ -2.01
CUX1P39880 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC2.52□□□□□ -2.01
CUX1P39880 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC2.52□□□□□ -2.01
CUX1P39880 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC2.52□□□□□ -2.01
CUX1P39880 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC2.52□□□□□ -2.01
CUX1P39880 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CUX1P39880 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
CUX1P39880 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
CUX1P39880 HMGB3P21-201ENST00000452483 547 ntBASIC2.52□□□□□ -2.01
CUX1P39880 HMGN1P8-201ENST00000463578 288 ntBASIC2.52□□□□□ -2.01
CUX1P39880 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC2.52□□□□□ -2.01
CUX1P39880 ATP5EP1-201ENST00000510257 156 ntBASIC2.52□□□□□ -2.01
CUX1P39880 SNORD116-26-201ENST00000516006 96 ntBASIC2.52□□□□□ -2.01
CUX1P39880 AP002748.2-201ENST00000528671 348 ntBASIC2.52□□□□□ -2.01
CUX1P39880 SNHG22-203ENST00000617833 660 ntBASIC2.52□□□□□ -2.01
CUX1P39880 ZNF209P-201ENST00000593450 2304 ntBASIC2.51□□□□□ -2.01
CUX1P39880 MFF-206ENST00000392059 1710 ntTSL 5 BASIC2.51□□□□□ -2.01
CUX1P39880 RPL23AP29-201ENST00000397284 453 ntBASIC2.51□□□□□ -2.01
CUX1P39880 SSXP9-201ENST00000417503 292 ntBASIC2.51□□□□□ -2.01
CUX1P39880 AL354695.1-201ENST00000427935 228 ntBASIC2.51□□□□□ -2.01
CUX1P39880 SNX5P1-201ENST00000505757 1041 ntBASIC2.51□□□□□ -2.01
CUX1P39880 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.51□□□□□ -2.01
CUX1P39880 AL163153.1-201ENST00000554223 283 ntBASIC2.51□□□□□ -2.01
CUX1P39880 AC024614.2-201ENST00000577584 372 ntBASIC2.51□□□□□ -2.01
CUX1P39880 AC006270.2-201ENST00000578523 652 ntBASIC2.51□□□□□ -2.01
CUX1P39880 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.51□□□□□ -2.01
CUX1P39880 AC090953.1-201ENST00000604305 1092 ntBASIC2.51□□□□□ -2.01
CUX1P39880 AC007620.3-201ENST00000608131 497 ntBASIC2.51□□□□□ -2.01
CUX1P39880 AC068944.2-201ENST00000610373 403 ntBASIC2.51□□□□□ -2.01
CUX1P39880 AL157834.3-201ENST00000615543 103 ntBASIC2.51□□□□□ -2.01
CUX1P39880 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.51□□□□□ -2.01
CUX1P39880 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CUX1P39880 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
CUX1P39880 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CUX1P39880 RNA5SP295-201ENST00000362655 121 ntBASIC2.5□□□□□ -2.01
CUX1P39880 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.5□□□□□ -2.01
CUX1P39880 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.5□□□□□ -2.01
CUX1P39880 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.5□□□□□ -2.01
CUX1P39880 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.5□□□□□ -2.01
CUX1P39880 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC2.5□□□□□ -2.01
CUX1P39880 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC2.5□□□□□ -2.01
CUX1P39880 AC132825.8-201ENST00000640783 297 ntBASIC2.5□□□□□ -2.01
CUX1P39880 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.5□□□□□ -2.01
CUX1P39880 SNORD114-22-201ENST00000365423 72 ntBASIC2.49□□□□□ -2.01
CUX1P39880 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.49□□□□□ -2.01
CUX1P39880 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms