Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
MSX2P35548 AL591848.1-201ENST00000413092 322 ntBASIC4.31□□□□□ -1.72
MSX2P35548 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
MSX2P35548 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC4.31□□□□□ -1.72
MSX2P35548 HMGB3P11-201ENST00000440127 604 ntBASIC4.31□□□□□ -1.72
MSX2P35548 AC011753.3-201ENST00000443436 406 ntBASIC4.31□□□□□ -1.72
MSX2P35548 PRPS1P1-201ENST00000445305 876 ntBASIC4.31□□□□□ -1.72
MSX2P35548 CEACAMP6-201ENST00000452007 574 ntBASIC4.31□□□□□ -1.72
MSX2P35548 ISCUP1-201ENST00000454451 448 ntBASIC4.31□□□□□ -1.72
MSX2P35548 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC4.31□□□□□ -1.72
MSX2P35548 SNORD121B-201ENST00000458838 81 ntBASIC4.31□□□□□ -1.72
MSX2P35548 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
MSX2P35548 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC4.31□□□□□ -1.72
MSX2P35548 AC116562.3-201ENST00000506136 177 ntBASIC4.31□□□□□ -1.72
MSX2P35548 RNA5SP154-201ENST00000516193 111 ntBASIC4.31□□□□□ -1.72
MSX2P35548 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC4.31□□□□□ -1.72
MSX2P35548 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC4.31□□□□□ -1.72
MSX2P35548 AC068587.5-201ENST00000528506 175 ntBASIC4.31□□□□□ -1.72
MSX2P35548 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.31□□□□□ -1.72
MSX2P35548 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.31□□□□□ -1.72
MSX2P35548 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.31□□□□□ -1.72
MSX2P35548 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.31□□□□□ -1.72
MSX2P35548 COX6CP3-201ENST00000580869 223 ntBASIC4.31□□□□□ -1.72
MSX2P35548 MIR3942-201ENST00000585264 109 ntBASIC4.31□□□□□ -1.72
MSX2P35548 BNIP3P25-201ENST00000596023 559 ntBASIC4.31□□□□□ -1.72
MSX2P35548 AL160290.3-201ENST00000604869 165 ntBASIC4.31□□□□□ -1.72
MSX2P35548 AC016925.2-201ENST00000605108 242 ntBASIC4.31□□□□□ -1.72
MSX2P35548 AC004908.2-201ENST00000609090 574 ntBASIC4.31□□□□□ -1.72
MSX2P35548 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSX2P35548 AC090510.2-201ENST00000617465 629 ntBASIC4.31□□□□□ -1.72
MSX2P35548 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
MSX2P35548 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
MSX2P35548 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.31□□□□□ -1.72
MSX2P35548 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC4.31□□□□□ -1.72
MSX2P35548 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSX2P35548 SAMMSON-226ENST00000642089 1582 ntBASIC4.31□□□□□ -1.72
MSX2P35548 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSX2P35548 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
MSX2P35548 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
MSX2P35548 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
MSX2P35548 RPL23P2-201ENST00000320371 421 ntBASIC4.3□□□□□ -1.72
MSX2P35548 RNA5SP443-201ENST00000363083 132 ntBASIC4.3□□□□□ -1.72
MSX2P35548 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
MSX2P35548 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
MSX2P35548 RNU6-1029P-201ENST00000384109 107 ntBASIC4.3□□□□□ -1.72
MSX2P35548 MIR93-201ENST00000385024 80 ntBASIC4.3□□□□□ -1.72
MSX2P35548 AL645927.1-201ENST00000396783 406 ntBASIC4.3□□□□□ -1.72
MSX2P35548 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.3□□□□□ -1.72
MSX2P35548 AL121834.1-202ENST00000404494 277 ntBASIC4.3□□□□□ -1.72
MSX2P35548 MIR548K-201ENST00000408406 116 ntBASIC4.3□□□□□ -1.72
MSX2P35548 RNU2-29P-201ENST00000410423 189 ntBASIC4.3□□□□□ -1.72
MSX2P35548 RPS12P23-201ENST00000419579 400 ntBASIC4.3□□□□□ -1.72
MSX2P35548 OR2AS1P-201ENST00000427827 319 ntBASIC4.3□□□□□ -1.72
MSX2P35548 PSMA2P3-201ENST00000429685 675 ntBASIC4.3□□□□□ -1.72
MSX2P35548 RPL23AP25-201ENST00000430973 463 ntBASIC4.3□□□□□ -1.72
MSX2P35548 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.3□□□□□ -1.72
MSX2P35548 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.3□□□□□ -1.72
MSX2P35548 AC069285.2-201ENST00000440210 275 ntBASIC4.3□□□□□ -1.72
MSX2P35548 IPO7P1-201ENST00000442031 636 ntBASIC4.3□□□□□ -1.72
MSX2P35548 AL353691.1-201ENST00000451332 387 ntBASIC4.3□□□□□ -1.72
MSX2P35548 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.3□□□□□ -1.72
MSX2P35548 MTND1P9-201ENST00000453775 944 ntBASIC4.3□□□□□ -1.72
MSX2P35548 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC4.3□□□□□ -1.72
MSX2P35548 RN7SL329P-201ENST00000467740 299 ntBASIC4.3□□□□□ -1.72
MSX2P35548 AC004453.1-201ENST00000487895 408 ntBASIC4.3□□□□□ -1.72
MSX2P35548 RN7SL808P-201ENST00000496066 299 ntBASIC4.3□□□□□ -1.72
MSX2P35548 AL139099.1-201ENST00000497398 403 ntBASIC4.3□□□□□ -1.72
MSX2P35548 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
MSX2P35548 AC021146.2-201ENST00000504736 556 ntBASIC4.3□□□□□ -1.72
MSX2P35548 SRP72-202ENST00000504757 745 ntTSL 2 BASIC4.3□□□□□ -1.72
MSX2P35548 OR51K1P-201ENST00000510214 950 ntBASIC4.3□□□□□ -1.72
MSX2P35548 HMGB1P41-201ENST00000520234 440 ntBASIC4.3□□□□□ -1.72
MSX2P35548 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.3□□□□□ -1.72
MSX2P35548 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC4.3□□□□□ -1.72
MSX2P35548 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC4.3□□□□□ -1.72
MSX2P35548 AC092470.1-201ENST00000546187 132 ntBASIC4.3□□□□□ -1.72
MSX2P35548 DNAJC8P1-201ENST00000554535 372 ntBASIC4.3□□□□□ -1.72
MSX2P35548 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.3□□□□□ -1.72
MSX2P35548 MIR4703-201ENST00000577728 79 ntBASIC4.3□□□□□ -1.72
MSX2P35548 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
MSX2P35548 AC245389.1-201ENST00000605141 529 ntBASIC4.3□□□□□ -1.72
MSX2P35548 AL031666.3-201ENST00000609320 1006 ntBASIC4.3□□□□□ -1.72
MSX2P35548 AL121612.2-201ENST00000612261 482 ntBASIC4.3□□□□□ -1.72
MSX2P35548 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.3□□□□□ -1.72
MSX2P35548 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.3□□□□□ -1.72
MSX2P35548 AC138305.3-201ENST00000624988 240 ntBASIC4.3□□□□□ -1.72
MSX2P35548 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
MSX2P35548 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
MSX2P35548 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
MSX2P35548 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
MSX2P35548 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
MSX2P35548 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.3□□□□□ -1.72
MSX2P35548 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
MSX2P35548 MAPK10-253ENST00000641010 4072 ntBASIC4.3□□□□□ -1.72
MSX2P35548 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.29□□□□□ -1.72
MSX2P35548 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
MSX2P35548 MTND4P14-201ENST00000435799 1354 ntBASIC4.29□□□□□ -1.72
MSX2P35548 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
MSX2P35548 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
MSX2P35548 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms