Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXD3P31249 Y_RNA.61-201ENST00000362835 102 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 Y_RNA.255-201ENST00000364581 97 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 RNU6-996P-201ENST00000365438 107 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 RNU6-637P-201ENST00000384050 107 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 RNU6-332P-201ENST00000391193 108 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 RNU6-712P-201ENST00000410558 100 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 RNU6-628P-201ENST00000410675 107 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 RNU2-41P-201ENST00000410991 178 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 RPS20P14-201ENST00000412545 360 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 OR51A5P-201ENST00000415429 942 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXD3P31249 EIF1P3-201ENST00000423841 334 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 OR2AS1P-201ENST00000427827 319 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXD3P31249 OR4C10P-201ENST00000434991 931 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 AC005094.1-201ENST00000440420 368 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 RPL29P29-201ENST00000448725 423 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXD3P31249 FGF7P3-201ENST00000454645 303 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXD3P31249 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXD3P31249 AL445433.1-201ENST00000457507 257 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 snoU13.3-201ENST00000459441 104 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 AP000873.1-201ENST00000463987 400 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXD3P31249 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HOXD3P31249 EIF4EP3-201ENST00000498782 656 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 AC108145.1-201ENST00000503770 153 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXD3P31249 NAF1-205ENST00000509434 385 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXD3P31249 IGKV1OR2-1-201ENST00000514060 354 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXD3P31249 RNA5SP446-201ENST00000515955 82 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 RNU4-60P-201ENST00000517239 135 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXD3P31249 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXD3P31249 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.4□□□□□ -1.87
HOXD3P31249 SUB1P1-201ENST00000524415 382 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXD3P31249 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXD3P31249 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.4□□□□□ -1.87
HOXD3P31249 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXD3P31249 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.4□□□□□ -1.87
HOXD3P31249 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 MIR92B-201ENST00000607575 96 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 AL713922.2-201ENST00000619384 716 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 AC006065.5-201ENST00000623427 349 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 AP003122.6-201ENST00000623831 495 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 AC099654.5-201ENST00000636479 350 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXD3P31249 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXD3P31249 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXD3P31249 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD3P31249 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD3P31249 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD3P31249 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD3P31249 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD3P31249 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD3P31249 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
HOXD3P31249 MTCO1P24-201ENST00000515438 1558 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 AC092326.2-201ENST00000624772 1561 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 AC244517.1-201ENST00000606030 2086 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD3P31249 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD3P31249 SNORA62.1-201ENST00000364287 154 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 RNU6-641P-201ENST00000384006 107 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 MIR3065-201ENST00000390137 79 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 RNU6-1009P-201ENST00000390996 107 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 RNU6-754P-201ENST00000391166 107 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 RPL32P23-201ENST00000397237 405 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 AL583834.1-201ENST00000406943 343 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 VDAC1P9-201ENST00000412766 841 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 UBE2FP1-201ENST00000416536 447 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 SSXP9-201ENST00000417503 292 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD3P31249 AC012498.1-201ENST00000424037 437 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXD3P31249 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD3P31249 RPL36AP53-201ENST00000432891 316 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXD3P31249 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXD3P31249 UBE2V1P7-201ENST00000446395 340 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXD3P31249 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD3P31249 DHFRP3-201ENST00000455595 559 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 AC005008.1-201ENST00000456151 612 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 MTND1P11-201ENST00000456661 876 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 RPS29P15-201ENST00000458329 171 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXD3P31249 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD3P31249 RN7SL812P-201ENST00000493791 279 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 NIPA2P2-201ENST00000496376 1083 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXD3P31249 AC004062.1-201ENST00000509926 645 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 RNU6-1095P-201ENST00000516148 108 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXD3P31249 SUMO2P20-201ENST00000520803 283 ntBASIC3.39□□□□□ -1.87
HOXD3P31249 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 138 ms