Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL3A1P02461 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
COL3A1P02461 AC012078.1-201ENST00000405035 1646 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
COL3A1P02461 Y_RNA.89-201ENST00000363031 102 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 RNU6-534P-201ENST00000364877 106 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
COL3A1P02461 Y_RNA.510-201ENST00000384511 114 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 RNU6-248P-201ENST00000410720 107 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 AC092745.2-202ENST00000411880 369 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 OFD1P12Y-201ENST00000427963 1207 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC4.3□□□□□ -1.72
COL3A1P02461 HMGB1P45-201ENST00000435986 653 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC4.3□□□□□ -1.72
COL3A1P02461 AL353093.1-201ENST00000441292 436 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 AL121877.1-201ENST00000453704 622 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 OFD1P4Y-201ENST00000455273 1179 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 ARPC3P2-201ENST00000457786 533 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 PMCHL2-203ENST00000457791 237 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 AC010401.1-201ENST00000463867 348 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL3A1P02461 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.3□□□□□ -1.72
COL3A1P02461 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC4.3□□□□□ -1.72
COL3A1P02461 NDUFB4P2-201ENST00000509515 391 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC4.3□□□□□ -1.72
COL3A1P02461 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC4.3□□□□□ -1.72
COL3A1P02461 MTCO2P4-201ENST00000517968 247 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 AP001893.2-201ENST00000526949 202 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 AL157687.1-201ENST00000554853 619 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 TGIF1P1-201ENST00000558095 802 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 HMGB1P33-201ENST00000563485 527 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC4.3□□□□□ -1.72
COL3A1P02461 BNIP3P8-201ENST00000597863 560 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 LLPHP1-201ENST00000603571 367 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 AL121655.1-201ENST00000605811 308 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC4.3□□□□□ -1.72
COL3A1P02461 AC011816.2-201ENST00000607089 556 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.3□□□□□ -1.72
COL3A1P02461 AC135507.2-201ENST00000612443 309 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC4.3□□□□□ -1.72
COL3A1P02461 AC108479.2-201ENST00000617314 601 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC4.3□□□□□ -1.72
COL3A1P02461 AL445264.1-201ENST00000621719 171 ntBASIC4.3□□□□□ -1.72
COL3A1P02461 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC4.3□□□□□ -1.72
COL3A1P02461 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.3□□□□□ -1.72
COL3A1P02461 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC4.3□□□□□ -1.72
COL3A1P02461 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC4.3□□□□□ -1.72
COL3A1P02461 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC4.3□□□□□ -1.72
COL3A1P02461 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL3A1P02461 AC092435.3-201ENST00000565538 3654 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL3A1P02461 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC4.29□□□□□ -1.72
COL3A1P02461 DCAF13P3-201ENST00000561147 1334 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.29□□□□□ -1.72
COL3A1P02461 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL3A1P02461 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL3A1P02461 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL3A1P02461 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
COL3A1P02461 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL3A1P02461 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC4.29□□□□□ -1.72
COL3A1P02461 RNU6-877P-201ENST00000383868 107 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 CALM2P3-201ENST00000400429 449 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 GSTA9P-201ENST00000406231 611 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 Y_RNA.598-201ENST00000410480 95 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 AC013404.1-201ENST00000413068 249 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.29□□□□□ -1.72
COL3A1P02461 FCF1P2-201ENST00000415284 583 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC4.29□□□□□ -1.72
COL3A1P02461 AL513185.2-201ENST00000425543 193 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC4.29□□□□□ -1.72
COL3A1P02461 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC4.29□□□□□ -1.72
COL3A1P02461 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC4.29□□□□□ -1.72
COL3A1P02461 OR6K1P-201ENST00000456766 971 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 AC135999.1-201ENST00000478962 479 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 RN7SL809P-201ENST00000482040 297 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 HMGN1P13-201ENST00000505795 138 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 AC018710.1-201ENST00000506509 158 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 AC022447.3-201ENST00000506865 495 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 AC108078.1-201ENST00000508073 725 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC4.29□□□□□ -1.72
COL3A1P02461 RN7SKP31-201ENST00000516354 278 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC4.29□□□□□ -1.72
COL3A1P02461 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC4.29□□□□□ -1.72
COL3A1P02461 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.29□□□□□ -1.72
COL3A1P02461 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC4.29□□□□□ -1.72
COL3A1P02461 AC239860.2-201ENST00000525886 270 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 MTND1P35-201ENST00000526739 508 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC4.29□□□□□ -1.72
COL3A1P02461 AC025260.1-201ENST00000548858 430 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 MIR3913-1-201ENST00000577744 102 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 MIR4425-201ENST00000580572 84 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 AP001004.1-201ENST00000582468 324 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 AC022432.1-201ENST00000595739 310 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 AL162713.1-201ENST00000604480 262 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 AL161729.4-201ENST00000604650 476 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 RNU6-88P-201ENST00000606801 100 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 AC112487.2-201ENST00000637950 304 ntBASIC4.29□□□□□ -1.72
COL3A1P02461 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL3A1P02461 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms