Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.31□□□□□ -1.88
SIX3O95343 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.31□□□□□ -1.88
SIX3O95343 OR4G2P-202ENST00000641004 1759 ntBASIC3.31□□□□□ -1.88
SIX3O95343 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
SIX3O95343 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
SIX3O95343 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.31□□□□□ -1.88
SIX3O95343 SNORA5A-201ENST00000384111 134 ntBASIC3.31□□□□□ -1.88
SIX3O95343 RNVU1-14-201ENST00000384770 164 ntBASIC3.31□□□□□ -1.88
SIX3O95343 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
SIX3O95343 RNA5SP31-201ENST00000411144 127 ntBASIC3.31□□□□□ -1.88
SIX3O95343 TPMTP3-201ENST00000411928 735 ntBASIC3.31□□□□□ -1.88
SIX3O95343 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC3.31□□□□□ -1.88
SIX3O95343 AC018630.2-202ENST00000422992 927 ntBASIC3.31□□□□□ -1.88
SIX3O95343 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC3.31□□□□□ -1.88
SIX3O95343 RPL35AP22-201ENST00000436855 335 ntBASIC3.31□□□□□ -1.88
SIX3O95343 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.31□□□□□ -1.88
SIX3O95343 HMGB3P8-201ENST00000449709 577 ntBASIC3.31□□□□□ -1.88
SIX3O95343 RPL36AP33-201ENST00000450395 310 ntBASIC3.31□□□□□ -1.88
SIX3O95343 RPS4XP22-201ENST00000480755 780 ntBASIC3.31□□□□□ -1.88
SIX3O95343 MTND4LP22-201ENST00000508209 276 ntBASIC3.31□□□□□ -1.88
SIX3O95343 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.31□□□□□ -1.88
SIX3O95343 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SIX3O95343 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.31□□□□□ -1.88
SIX3O95343 AP003497.1-201ENST00000528472 562 ntBASIC3.31□□□□□ -1.88
SIX3O95343 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.31□□□□□ -1.88
SIX3O95343 AC013828.2-201ENST00000532487 235 ntBASIC3.31□□□□□ -1.88
SIX3O95343 AC068587.4-201ENST00000533893 186 ntBASIC3.31□□□□□ -1.88
SIX3O95343 AL133271.1-201ENST00000538229 291 ntBASIC3.31□□□□□ -1.88
SIX3O95343 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.31□□□□□ -1.88
SIX3O95343 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.31□□□□□ -1.88
SIX3O95343 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC3.31□□□□□ -1.88
SIX3O95343 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.31□□□□□ -1.88
SIX3O95343 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.31□□□□□ -1.88
SIX3O95343 AC013244.3-201ENST00000605614 388 ntBASIC3.31□□□□□ -1.88
SIX3O95343 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SIX3O95343 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC3.31□□□□□ -1.88
SIX3O95343 AC019226.1-201ENST00000625666 515 ntBASIC3.31□□□□□ -1.88
SIX3O95343 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
SIX3O95343 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SIX3O95343 AC007496.3-201ENST00000624987 3443 ntBASIC3.31□□□□□ -1.88
SIX3O95343 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.3□□□□□ -1.88
SIX3O95343 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SIX3O95343 TPTE2P4-201ENST00000258589 1605 ntBASIC3.3□□□□□ -1.88
SIX3O95343 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SIX3O95343 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SIX3O95343 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
SIX3O95343 ZNF736P9Y-201ENST00000439586 1345 ntBASIC3.3□□□□□ -1.88
SIX3O95343 RNU1-75P-201ENST00000347264 129 ntBASIC3.3□□□□□ -1.88
SIX3O95343 RNU6-1214P-201ENST00000363650 109 ntBASIC3.3□□□□□ -1.88
SIX3O95343 SNORA48.2-201ENST00000390926 124 ntBASIC3.3□□□□□ -1.88
SIX3O95343 SNORD17-201ENST00000390930 237 ntBASIC3.3□□□□□ -1.88
SIX3O95343 AL139095.1-201ENST00000404326 391 ntBASIC3.3□□□□□ -1.88
SIX3O95343 RN7SKP266-201ENST00000410232 287 ntBASIC3.3□□□□□ -1.88
SIX3O95343 RNA5SP38-201ENST00000410750 119 ntBASIC3.3□□□□□ -1.88
SIX3O95343 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SIX3O95343 RPS7P13-201ENST00000413955 498 ntBASIC3.3□□□□□ -1.88
SIX3O95343 RPL31P12-201ENST00000422587 358 ntBASIC3.3□□□□□ -1.88
SIX3O95343 PPP1R11P2-201ENST00000423543 382 ntBASIC3.3□□□□□ -1.88
SIX3O95343 MTCO2P17-201ENST00000424336 677 ntBASIC3.3□□□□□ -1.88
SIX3O95343 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.3□□□□□ -1.88
SIX3O95343 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC3.3□□□□□ -1.88
SIX3O95343 AC006539.3-201ENST00000454258 129 ntBASIC3.3□□□□□ -1.88
SIX3O95343 AL359385.1-201ENST00000456509 365 ntBASIC3.3□□□□□ -1.88
SIX3O95343 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.3□□□□□ -1.88
SIX3O95343 HMGN1P18-201ENST00000457642 277 ntBASIC3.3□□□□□ -1.88
SIX3O95343 RN7SL442P-201ENST00000473804 320 ntBASIC3.3□□□□□ -1.88
SIX3O95343 AC072039.1-201ENST00000477611 581 ntBASIC3.3□□□□□ -1.88
SIX3O95343 MTND2P14-201ENST00000482139 351 ntBASIC3.3□□□□□ -1.88
SIX3O95343 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.3□□□□□ -1.88
SIX3O95343 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.3□□□□□ -1.88
SIX3O95343 AC022447.3-201ENST00000506865 495 ntBASIC3.3□□□□□ -1.88
SIX3O95343 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC3.3□□□□□ -1.88
SIX3O95343 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.3□□□□□ -1.88
SIX3O95343 SNORD59.2-201ENST00000516873 68 ntBASIC3.3□□□□□ -1.88
SIX3O95343 AC103843.2-201ENST00000530523 682 ntBASIC3.3□□□□□ -1.88
SIX3O95343 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.3□□□□□ -1.88
SIX3O95343 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.3□□□□□ -1.88
SIX3O95343 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.3□□□□□ -1.88
SIX3O95343 AC005476.1-201ENST00000554427 397 ntBASIC3.3□□□□□ -1.88
SIX3O95343 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.3□□□□□ -1.88
SIX3O95343 MIR5047-201ENST00000579212 100 ntBASIC3.3□□□□□ -1.88
SIX3O95343 AC136601.2-201ENST00000604356 474 ntBASIC3.3□□□□□ -1.88
SIX3O95343 AC097468.3-201ENST00000607956 456 ntBASIC3.3□□□□□ -1.88
SIX3O95343 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.3□□□□□ -1.88
SIX3O95343 AL034408.1-202ENST00000636088 415 ntBASIC3.3□□□□□ -1.88
SIX3O95343 AC127502.3-201ENST00000636170 1206 ntBASIC3.3□□□□□ -1.88
SIX3O95343 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SIX3O95343 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SIX3O95343 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.3□□□□□ -1.88
SIX3O95343 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.3□□□□□ -1.88
SIX3O95343 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.3□□□□□ -1.88
SIX3O95343 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
SIX3O95343 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.29□□□□□ -1.88
SIX3O95343 MTCO1P12-201ENST00000414273 1543 ntBASIC3.29□□□□□ -1.88
SIX3O95343 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.29□□□□□ -1.88
SIX3O95343 RNU4-35P-201ENST00000362588 141 ntBASIC3.29□□□□□ -1.88
SIX3O95343 RNU5E-8P-201ENST00000363502 116 ntBASIC3.29□□□□□ -1.88
SIX3O95343 RNU6-1200P-201ENST00000384162 107 ntBASIC3.29□□□□□ -1.88
SIX3O95343 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
SIX3O95343 AL359704.1-201ENST00000411586 781 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 139.6 ms