Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC010401.1-201ENST00000463867 348 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 RPS23P3-201ENST00000470993 430 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC024589.1-201ENST00000512207 263 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 RNA5SP216-201ENST00000516111 123 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 NAP1L1P1-201ENST00000524793 1063 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC011602.1-201ENST00000546484 331 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC136618.2-201ENST00000575091 400 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC090615.1-201ENST00000577519 154 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AL353997.4-201ENST00000586196 166 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC021171.1-201ENST00000603137 706 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC090186.1-201ENST00000605991 572 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 RMST_8.1-201ENST00000610287 165 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AL442067.2-201ENST00000614033 363 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AL356596.1-201ENST00000624230 379 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC097520.1-201ENST00000624435 385 ntBASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CPSF3Q9UKF6 AC090740.1-201ENST00000623193 2262 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 RNA5SP88-201ENST00000365560 109 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 RNU6-723P-201ENST00000383973 107 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 MIR184-201ENST00000384962 84 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 RNU4-47P-201ENST00000410876 114 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 RPS15AP38-201ENST00000413110 372 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 DNAJA1P2-201ENST00000421360 1197 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 MTND1P20-201ENST00000430341 950 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 ATG12P2-201ENST00000456830 416 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 MTCO2P6-201ENST00000463134 685 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 AC068587.2-201ENST00000478386 781 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 TXNP6-201ENST00000510190 310 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 AC017037.2-201ENST00000513850 890 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 IGHV3-76-201ENST00000522465 295 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 CR383656.7-201ENST00000548164 174 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 AP000811.1-201ENST00000603803 651 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 DUXAP11-201ENST00000603858 526 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 RNU6-88P-201ENST00000606801 100 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 AP003485.2-201ENST00000623636 610 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 MIR3651-201ENST00000630427 90 ntBASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
CPSF3Q9UKF6 ZNF736P9Y-201ENST00000439586 1345 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 Y_RNA.302-201ENST00000364997 102 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 Y_RNA.333-201ENST00000365274 102 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 RPS3AP26-201ENST00000398259 784 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 RNA5SP31-201ENST00000411144 127 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 AC107081.1-201ENST00000414975 361 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 RPS15AP6-201ENST00000420703 385 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 MTCO1P39-201ENST00000426148 480 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 NEK4P1-201ENST00000433383 879 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 BX679664.1-201ENST00000434429 253 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 UBE2D3P1-201ENST00000436669 444 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 CST9LP2-201ENST00000437612 320 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 LSM1P1-201ENST00000438629 273 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 RPL17P49-201ENST00000443728 411 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 200.1 ms