Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
VPS28Q9UK41 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
VPS28Q9UK41 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.65□□□□□ -1.83
VPS28Q9UK41 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS28Q9UK41 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
VPS28Q9UK41 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS28Q9UK41 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS28Q9UK41 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS28Q9UK41 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS28Q9UK41 RNY4P24-201ENST00000362735 96 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 SNORA23-201ENST00000365128 182 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 RNU5A-2P-201ENST00000384337 116 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 MIR514A1-201ENST00000385133 98 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 RNU6-1197P-201ENST00000391183 107 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 RNU6-1077P-201ENST00000410506 102 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 DBIP2-201ENST00000419076 262 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS28Q9UK41 NDUFB4P7-201ENST00000423198 363 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 USP9YP36-201ENST00000424581 829 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS28Q9UK41 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
VPS28Q9UK41 AC234781.2-201ENST00000426370 994 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 AC006989.1-201ENST00000427212 131 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS28Q9UK41 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS28Q9UK41 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS28Q9UK41 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS28Q9UK41 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS28Q9UK41 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS28Q9UK41 AL590664.1-201ENST00000448065 339 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 MTND2P24-201ENST00000453434 806 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 AL139824.2-201ENST00000458731 1095 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 RPL23AP14-201ENST00000468281 468 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 AC034236.1-201ENST00000469891 373 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 RPL7L1P8-201ENST00000469911 741 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.64□□□□□ -1.83
VPS28Q9UK41 AC135721.1-201ENST00000497954 479 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 OR2A20P-203ENST00000498397 1268 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS28Q9UK41 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.64□□□□□ -1.83
VPS28Q9UK41 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS28Q9UK41 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS28Q9UK41 CCNG2P1-201ENST00000549521 1000 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 RPL23AP84-201ENST00000571193 464 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS28Q9UK41 AC019176.2-201ENST00000611579 315 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 AC004223.4-201ENST00000612426 332 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 AC093838.1-201ENST00000613014 469 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 AC079416.3-201ENST00000624479 549 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 AL392088.2-201ENST00000637607 285 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS28Q9UK41 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
VPS28Q9UK41 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS28Q9UK41 CCT4P2-201ENST00000233836 1548 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 RIOK3P1-201ENST00000418778 1528 ntBASIC3.64□□□□□ -1.83
VPS28Q9UK41 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS28Q9UK41 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
VPS28Q9UK41 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VPS28Q9UK41 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
VPS28Q9UK41 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VPS28Q9UK41 RNU6-500P-201ENST00000362349 107 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 HMGN1P24-201ENST00000412282 298 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 AC009237.5-201ENST00000414271 501 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS28Q9UK41 MTND4P20-201ENST00000424125 869 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 AL451062.2-201ENST00000427515 271 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 AL512649.1-201ENST00000428997 581 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS28Q9UK41 HIGD1AP11-201ENST00000438361 280 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 AC092641.1-201ENST00000440229 772 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 AL162389.1-201ENST00000449233 177 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 MRPS31P2-201ENST00000451581 518 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VPS28Q9UK41 HMGN2P13-201ENST00000476476 274 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 RPL30P14-201ENST00000482744 348 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 RPL32P34-201ENST00000486380 400 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 RPS3AP22-201ENST00000488297 769 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 AC114967.1-201ENST00000504890 259 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS28Q9UK41 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC3.63□□□□□ -1.83
VPS28Q9UK41 SCARNA15.2-201ENST00000516409 127 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 RNU6-579P-201ENST00000516879 102 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS28Q9UK41 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS28Q9UK41 AC008015.1-201ENST00000555505 465 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS28Q9UK41 MIR4307-201ENST00000582802 84 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 AC090616.2-202ENST00000584248 222 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 PRELID3BP8-201ENST00000604148 295 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 AL139344.1-201ENST00000605228 195 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 AC018638.7-201ENST00000605836 1114 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 AC004908.2-201ENST00000609090 574 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 AC012314.7-201ENST00000619693 93 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 AC091304.6-201ENST00000619761 202 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 AC244100.1-202ENST00000621554 382 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 AL138713.1-201ENST00000624026 2130 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 MTCO1P12-201ENST00000414273 1543 ntBASIC3.63□□□□□ -1.83
VPS28Q9UK41 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VPS28Q9UK41 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
VPS28Q9UK41 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms