Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC007318.2-201ENST00000620999 243 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC011330.2-201ENST00000621680 635 ntBASIC3.06□□□□□ -1.92
LHX3Q9UBR4 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
LHX3Q9UBR4 AC004972.1-201ENST00000623934 2209 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 MTCO1P9-201ENST00000505577 1534 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 PCF11-AS1-201ENST00000602322 1516 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AC011477.1-204ENST00000623416 1325 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 RNA5SP293-201ENST00000410527 113 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AC009237.5-201ENST00000414271 501 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 HMGB1P49-201ENST00000418882 569 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 NEK4P1-201ENST00000433383 879 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 SNRPEP4-201ENST00000435815 279 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 Z80107.1-201ENST00000436830 412 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 EEF1E1P1-201ENST00000446998 430 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 MTND1P31-201ENST00000449206 961 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AC104563.1-201ENST00000476147 376 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AC068724.1-201ENST00000487100 792 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AC024589.1-201ENST00000512207 263 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 RNU6-528P-201ENST00000516926 100 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AP001372.4-201ENST00000524889 472 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AC022690.1-201ENST00000526681 550 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 PDCL2P2-201ENST00000533651 189 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AL133507.1-201ENST00000605269 557 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AC092106.3-201ENST00000611308 722 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AC068831.7-201ENST00000616954 363 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AC091046.2-201ENST00000620775 665 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AP002782.1-201ENST00000623107 614 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AC079228.1-201ENST00000624774 1049 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 MIR7153-201ENST00000637758 57 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AC090740.1-201ENST00000623193 2262 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AC118273.1-201ENST00000525324 3006 ntBASIC3.05□□□□□ -1.92
LHX3Q9UBR4 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
LHX3Q9UBR4 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 DEFB108F-201ENST00000344638 222 ntBASIC3.04□□□□□ -1.92
LHX3Q9UBR4 RNU6-359P-201ENST00000365466 108 ntBASIC3.04□□□□□ -1.92
LHX3Q9UBR4 RNU6-805P-201ENST00000365643 106 ntBASIC3.04□□□□□ -1.92
LHX3Q9UBR4 RNU6-83P-201ENST00000384568 112 ntBASIC3.04□□□□□ -1.92
LHX3Q9UBR4 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 U3.42-201ENST00000408746 214 ntBASIC3.04□□□□□ -1.92
LHX3Q9UBR4 RNU6-757P-201ENST00000410334 100 ntBASIC3.04□□□□□ -1.92
LHX3Q9UBR4 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.04□□□□□ -1.92
LHX3Q9UBR4 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 MTATP6P4-201ENST00000427725 675 ntBASIC3.04□□□□□ -1.92
LHX3Q9UBR4 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 THAP5P1-201ENST00000439089 262 ntBASIC3.04□□□□□ -1.92
LHX3Q9UBR4 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 AC125238.1-201ENST00000448842 249 ntBASIC3.04□□□□□ -1.92
LHX3Q9UBR4 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 RPL37P4-201ENST00000448908 268 ntBASIC3.04□□□□□ -1.92
LHX3Q9UBR4 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 SNORD11.1-201ENST00000459482 85 ntBASIC3.04□□□□□ -1.92
LHX3Q9UBR4 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 RN7SKP272-201ENST00000516988 232 ntBASIC3.04□□□□□ -1.92
LHX3Q9UBR4 ERHP1-201ENST00000523006 310 ntBASIC3.04□□□□□ -1.92
LHX3Q9UBR4 DEFB108D-201ENST00000527787 222 ntBASIC3.04□□□□□ -1.92
LHX3Q9UBR4 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 AC087465.1-201ENST00000560574 245 ntBASIC3.04□□□□□ -1.92
LHX3Q9UBR4 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 AC055876.1-202ENST00000567053 138 ntBASIC3.04□□□□□ -1.92
LHX3Q9UBR4 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 MIR5047-201ENST00000579212 100 ntBASIC3.04□□□□□ -1.92
LHX3Q9UBR4 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 AL596327.1-201ENST00000603629 213 ntBASIC3.04□□□□□ -1.92
LHX3Q9UBR4 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms