Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RNU6-694P-201ENST00000364071 147 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 SNORA71.2-201ENST00000364941 134 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 EI24P1-201ENST00000416584 867 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 AC245028.1-201ENST00000423259 256 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 AC093106.2-201ENST00000428212 385 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 AC024082.2-201ENST00000434771 238 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 GAPDHP27-201ENST00000447427 1020 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 AL162591.2-201ENST00000449634 317 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 FABP5P13-201ENST00000452144 328 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 RPS29P33-201ENST00000456717 146 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 AC007547.1-201ENST00000462177 490 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 RN7SL354P-201ENST00000469282 294 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 RPL23AP2-201ENST00000471227 466 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 TRBV1-201ENST00000476502 284 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 AC007016.1-201ENST00000512110 244 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 SNORA31.20-201ENST00000517111 133 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 MTND4P7-201ENST00000523876 130 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 AC037471.2-201ENST00000564941 598 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 SNRPGP15-201ENST00000600149 222 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 AC234771.5-201ENST00000600161 514 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 AC010133.1-201ENST00000615809 842 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 MIR7703-201ENST00000620784 77 ntBASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
TRIM39Q9HCM9 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.59□□□□□ -1.68
TRIM39Q9HCM9 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
TRIM39Q9HCM9 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
TRIM39Q9HCM9 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
TRIM39Q9HCM9 AL672167.1-203ENST00000641299 2975 ntBASIC4.59□□□□□ -1.68
TRIM39Q9HCM9 AC125257.1-201ENST00000560400 2930 ntBASIC4.59□□□□□ -1.68
TRIM39Q9HCM9 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 AC103710.2-202ENST00000641454 2853 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 Y_RNA.356-201ENST00000365475 113 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 Y_RNA.576-201ENST00000384781 102 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 MIR514A2-201ENST00000385131 88 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 MIR514A3-201ENST00000385132 88 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 SOD2P1-201ENST00000396543 562 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 LAP3P1-201ENST00000403648 294 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 AL121834.1-202ENST00000404494 277 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 RN7SKP32-201ENST00000410167 303 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 RPL26P29-201ENST00000415623 438 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 RPL7L1P10-201ENST00000427790 463 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 TRAPPC2P3-201ENST00000443200 321 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 AL359073.1-201ENST00000448036 403 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 SCARNA10-201ENST00000459255 330 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 HMGN2P26-201ENST00000463169 339 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 PANCR-202ENST00000513690 448 ntTSL 2 BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 RNU6-352P-201ENST00000516908 107 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 AC087241.2-201ENST00000535801 324 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 AC023050.3-201ENST00000541142 333 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 AC078814.3-201ENST00000553036 491 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 VN1R80P-201ENST00000597126 338 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 AC087045.1-201ENST00000605856 382 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 uc_338.34-201ENST00000617467 174 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 AC022140.2-201ENST00000623500 188 ntBASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
TRIM39Q9HCM9 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.57□□□□□ -1.68
TRIM39Q9HCM9 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
TRIM39Q9HCM9 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 137.7 ms