Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 AC123904.2-201ENST00000548059 300 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 AC074050.1-201ENST00000563247 211 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 AC004223.2-201ENST00000590309 544 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 AC011451.2-201ENST00000604303 598 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 AC245389.1-201ENST00000605141 529 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 AL451086.1-201ENST00000605596 223 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 AC005344.1-201ENST00000613391 459 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 AC015967.1-201ENST00000619893 476 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 AC112204.3-201ENST00000623822 332 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 AC048347.1-201ENST00000624621 427 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 AL603839.4-201ENST00000624658 1005 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
NKX3-1Q99801 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
NKX3-1Q99801 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
NKX3-1Q99801 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
NKX3-1Q99801 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.12□□□□□ -1.91
NKX3-1Q99801 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
NKX3-1Q99801 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
NKX3-1Q99801 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
NKX3-1Q99801 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.12□□□□□ -1.91
NKX3-1Q99801 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
NKX3-1Q99801 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.12□□□□□ -1.91
NKX3-1Q99801 SNORA7.2-201ENST00000364446 145 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.12□□□□□ -1.91
NKX3-1Q99801 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.12□□□□□ -1.91
NKX3-1Q99801 RNU6-297P-201ENST00000384636 107 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 MIR607-201ENST00000385241 96 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
NKX3-1Q99801 RPL7P25-201ENST00000404151 721 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 Y_RNA.608-201ENST00000410647 95 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
NKX3-1Q99801 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 MTCO2P34-201ENST00000421994 607 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 BEND7P1-201ENST00000422058 457 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.12□□□□□ -1.91
NKX3-1Q99801 GOT2P5-201ENST00000433995 546 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.12□□□□□ -1.91
NKX3-1Q99801 AC108734.1-201ENST00000439549 399 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.12□□□□□ -1.91
NKX3-1Q99801 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.12□□□□□ -1.91
NKX3-1Q99801 RPS24P6-201ENST00000452670 400 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 AC099563.1-201ENST00000456086 418 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 RNU6-956P-201ENST00000458868 103 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 AC055855.1-201ENST00000489563 579 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 PCBP2P3-201ENST00000509726 843 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.12□□□□□ -1.91
NKX3-1Q99801 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC3.12□□□□□ -1.91
NKX3-1Q99801 RN7SKP244-201ENST00000516513 307 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 RNU6-1073P-201ENST00000517182 106 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 IGKV2-23-201ENST00000518729 323 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 AP003122.4-201ENST00000530980 758 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
NKX3-1Q99801 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.12□□□□□ -1.91
NKX3-1Q99801 AL133271.1-201ENST00000538229 291 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 AC018630.1-201ENST00000541376 925 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 CYCSP30-201ENST00000546447 172 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.12□□□□□ -1.91
NKX3-1Q99801 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC3.12□□□□□ -1.91
NKX3-1Q99801 AL845331.3-202ENST00000562856 261 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
NKX3-1Q99801 MIR4429-201ENST00000580105 73 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 AC103987.3-201ENST00000582071 292 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC3.12□□□□□ -1.91
NKX3-1Q99801 AL158211.4-201ENST00000606988 584 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.12□□□□□ -1.91
NKX3-1Q99801 AC108747.1-201ENST00000609508 535 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 OR10AB1P-201ENST00000609613 938 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 TUG1_1.1-201ENST00000610654 145 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.12□□□□□ -1.91
NKX3-1Q99801 AC006133.1-201ENST00000617106 264 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 CR392039.5-201ENST00000623201 510 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.12□□□□□ -1.91
NKX3-1Q99801 AC119674.1-207ENST00000641355 633 ntBASIC3.12□□□□□ -1.91
NKX3-1Q99801 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
NKX3-1Q99801 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
NKX3-1Q99801 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
NKX3-1Q99801 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
NKX3-1Q99801 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.12□□□□□ -1.91
NKX3-1Q99801 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 AC009902.3-201ENST00000606235 2172 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
NKX3-1Q99801 FGF7P2-201ENST00000332473 296 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 Y_RNA.359-201ENST00000365498 102 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 AP002088.1-201ENST00000382740 395 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 RNU6-328P-201ENST00000390887 106 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 RPS7P13-201ENST00000413955 498 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 DBIP2-201ENST00000419076 262 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 AL137014.1-201ENST00000420490 1226 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms