Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AKIRIN1P1-201ENST00000547384 544 ntBASIC1.49□□□□□ -2.17
VPS13AQ96RL7 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC1.49□□□□□ -2.17
VPS13AQ96RL7 AC023825.1-201ENST00000566704 1030 ntBASIC1.49□□□□□ -2.17
VPS13AQ96RL7 MIR4419B-201ENST00000577260 68 ntBASIC1.49□□□□□ -2.17
VPS13AQ96RL7 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC1.49□□□□□ -2.17
VPS13AQ96RL7 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
VPS13AQ96RL7 SLC10A5P1-201ENST00000379063 1306 ntBASIC1.49□□□□□ -2.17
VPS13AQ96RL7 ZNF271P-202ENST00000465539 1970 ntBASIC1.49□□□□□ -2.17
VPS13AQ96RL7 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
VPS13AQ96RL7 AC104986.1-201ENST00000517978 436 ntBASIC1.49□□□□□ -2.17
VPS13AQ96RL7 AC087373.1-201ENST00000524920 491 ntBASIC1.49□□□□□ -2.17
VPS13AQ96RL7 FAM106DP-201ENST00000586416 501 ntBASIC1.49□□□□□ -2.17
VPS13AQ96RL7 AC012321.1-201ENST00000561622 1588 ntBASIC1.49□□□□□ -2.17
VPS13AQ96RL7 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.49□□□□□ -2.17
VPS13AQ96RL7 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
VPS13AQ96RL7 AF274854.1-201ENST00000413236 615 ntBASIC1.49□□□□□ -2.17
VPS13AQ96RL7 ARF4P2-201ENST00000430209 526 ntBASIC1.49□□□□□ -2.17
VPS13AQ96RL7 AL162388.1-201ENST00000450912 352 ntBASIC1.49□□□□□ -2.17
VPS13AQ96RL7 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
VPS13AQ96RL7 HMGN1P28-201ENST00000521340 364 ntBASIC1.49□□□□□ -2.17
VPS13AQ96RL7 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC1.49□□□□□ -2.17
VPS13AQ96RL7 AC068135.2-201ENST00000569293 1028 ntBASIC1.49□□□□□ -2.17
VPS13AQ96RL7 AC016727.2-201ENST00000603988 621 ntBASIC1.49□□□□□ -2.17
VPS13AQ96RL7 PCF11-AS1-201ENST00000602322 1516 ntBASIC1.48□□□□□ -2.17
VPS13AQ96RL7 RNU4-41P-201ENST00000364426 143 ntBASIC1.48□□□□□ -2.17
VPS13AQ96RL7 RPL31P2-201ENST00000413849 377 ntBASIC1.48□□□□□ -2.17
VPS13AQ96RL7 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC1.48□□□□□ -2.17
VPS13AQ96RL7 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC1.48□□□□□ -2.17
VPS13AQ96RL7 AC090071.1-201ENST00000507713 644 ntBASIC1.48□□□□□ -2.17
VPS13AQ96RL7 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.48□□□□□ -2.17
VPS13AQ96RL7 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
VPS13AQ96RL7 AGL-204ENST00000370161 6923 ntTSL 5 BASIC1.48□□□□□ -2.17
VPS13AQ96RL7 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC1.48□□□□□ -2.17
VPS13AQ96RL7 Y_RNA.115-201ENST00000363272 98 ntBASIC1.48□□□□□ -2.17
VPS13AQ96RL7 SNORA16.1-201ENST00000364597 132 ntBASIC1.48□□□□□ -2.17
VPS13AQ96RL7 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
VPS13AQ96RL7 RPL30P3-201ENST00000424262 333 ntBASIC1.48□□□□□ -2.17
VPS13AQ96RL7 AC079203.1-201ENST00000487972 404 ntBASIC1.48□□□□□ -2.17
VPS13AQ96RL7 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.48□□□□□ -2.17
VPS13AQ96RL7 AC091488.1-201ENST00000604239 660 ntBASIC1.48□□□□□ -2.17
VPS13AQ96RL7 AL627230.5-201ENST00000619807 58 ntBASIC1.48□□□□□ -2.17
VPS13AQ96RL7 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC1.48□□□□□ -2.17
VPS13AQ96RL7 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.48□□□□□ -2.17
VPS13AQ96RL7 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC1.48□□□□□ -2.17
VPS13AQ96RL7 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 HMGB3P2-201ENST00000411913 584 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 FTH1P12-201ENST00000432137 551 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 SEPT7P3-201ENST00000455017 621 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 AC021382.1-201ENST00000483523 359 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 MTND5P4-201ENST00000514978 288 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.47□□□□□ -2.17
VPS13AQ96RL7 AL021368.2-201ENST00000606125 5352 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.47□□□□□ -2.17
VPS13AQ96RL7 RNU6-882P-201ENST00000391025 103 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.47□□□□□ -2.17
VPS13AQ96RL7 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC1.47□□□□□ -2.17
VPS13AQ96RL7 MTCYBP18-201ENST00000501056 747 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 FABP5P5-201ENST00000515537 406 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 SNORA50A-202ENST00000629536 136 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC1.47□□□□□ -2.17
VPS13AQ96RL7 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC1.47□□□□□ -2.17
VPS13AQ96RL7 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
VPS13AQ96RL7 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC1.47□□□□□ -2.17
VPS13AQ96RL7 RPS3AP44-201ENST00000425466 790 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
VPS13AQ96RL7 TPT1P14-201ENST00000448018 505 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC1.47□□□□□ -2.17
VPS13AQ96RL7 snoU13.3-201ENST00000459441 104 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 AC021087.2-201ENST00000504656 1203 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
VPS13AQ96RL7 AL359273.1-201ENST00000510918 627 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 RNA5SP436-201ENST00000516020 115 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 AC084851.1-201ENST00000529105 249 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 MIR5000-201ENST00000577717 103 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 AC096720.1-201ENST00000604441 183 ntBASIC1.47□□□□□ -2.17
VPS13AQ96RL7 WWP1P1-201ENST00000466609 2769 ntBASIC1.46□□□□□ -2.17
VPS13AQ96RL7 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
VPS13AQ96RL7 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
VPS13AQ96RL7 SETP8-201ENST00000435341 628 ntBASIC1.46□□□□□ -2.18
VPS13AQ96RL7 SNORA31.11-201ENST00000516528 139 ntBASIC1.46□□□□□ -2.18
VPS13AQ96RL7 TRAV28-201ENST00000557548 323 ntBASIC1.46□□□□□ -2.18
VPS13AQ96RL7 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC1.46□□□□□ -2.18
VPS13AQ96RL7 AC112191.3-201ENST00000604371 277 ntBASIC1.46□□□□□ -2.18
VPS13AQ96RL7 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC1.46□□□□□ -2.18
VPS13AQ96RL7 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC1.46□□□□□ -2.18
VPS13AQ96RL7 SNORA68.2-201ENST00000391263 128 ntBASIC1.46□□□□□ -2.18
VPS13AQ96RL7 AL033519.2-201ENST00000403958 392 ntBASIC1.46□□□□□ -2.18
VPS13AQ96RL7 USP9YP27-201ENST00000418455 438 ntBASIC1.46□□□□□ -2.18
VPS13AQ96RL7 AC096992.1-201ENST00000459808 709 ntBASIC1.46□□□□□ -2.18
VPS13AQ96RL7 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
VPS13AQ96RL7 ARL2BPP4-201ENST00000506854 471 ntBASIC1.46□□□□□ -2.18
VPS13AQ96RL7 AC098799.2-201ENST00000509466 868 ntBASIC1.46□□□□□ -2.18
VPS13AQ96RL7 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC1.46□□□□□ -2.18
VPS13AQ96RL7 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.46□□□□□ -2.18
VPS13AQ96RL7 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC1.45□□□□□ -2.18
VPS13AQ96RL7 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC1.45□□□□□ -2.18
VPS13AQ96RL7 AC091544.1-201ENST00000484702 348 ntBASIC1.45□□□□□ -2.18
VPS13AQ96RL7 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC1.45□□□□□ -2.18
VPS13AQ96RL7 RNU6-405P-201ENST00000516637 110 ntBASIC1.45□□□□□ -2.18
VPS13AQ96RL7 RNU6-467P-201ENST00000517027 110 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 132.7 ms