Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS35Q96QK1 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.01□□□□□ -1.93
VPS35Q96QK1 SNORA31.1-201ENST00000515993 133 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 SNORA31.5-201ENST00000516190 133 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.01□□□□□ -1.93
VPS35Q96QK1 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS35Q96QK1 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.01□□□□□ -1.93
VPS35Q96QK1 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS35Q96QK1 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.01□□□□□ -1.93
VPS35Q96QK1 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS35Q96QK1 AC023813.2-201ENST00000564321 469 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
VPS35Q96QK1 MTCO3P24-201ENST00000572729 782 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 OR4K7P-201ENST00000580232 945 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 AC009220.3-201ENST00000604318 586 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 AL391834.2-201ENST00000609982 546 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 AC131902.3-201ENST00000611767 581 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
VPS35Q96QK1 AC090617.7-201ENST00000623952 126 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 LRRC77P-213ENST00000637727 880 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 AL390862.1-201ENST00000635467 1469 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
VPS35Q96QK1 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.01□□□□□ -1.93
VPS35Q96QK1 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
VPS35Q96QK1 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.01□□□□□ -1.93
VPS35Q96QK1 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
VPS35Q96QK1 AC011460.1-201ENST00000636268 1834 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3□□□□□ -1.93
VPS35Q96QK1 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3□□□□□ -1.93
VPS35Q96QK1 RNU6-343P-201ENST00000364709 104 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 RNU6-621P-201ENST00000364752 109 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3□□□□□ -1.93
VPS35Q96QK1 RPL23AP29-201ENST00000397284 453 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AL138885.1-201ENST00000405921 675 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 RNA5SP274-201ENST00000410484 108 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3□□□□□ -1.93
VPS35Q96QK1 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3□□□□□ -1.93
VPS35Q96QK1 CCDC58P2-201ENST00000417131 366 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 NDUFB4P6-201ENST00000436819 366 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AL590664.1-201ENST00000448065 339 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AC140076.1-201ENST00000449897 361 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 ZNF886P-201ENST00000450781 723 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3□□□□□ -1.93
VPS35Q96QK1 BX322784.1-201ENST00000455793 1077 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AC005410.1-202ENST00000460347 485 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 WDR78-207ENST00000488333 613 ntTSL 3 BASIC3□□□□□ -1.93
VPS35Q96QK1 RPL7P23-201ENST00000493874 747 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 OR2A20P-203ENST00000498397 1268 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AC109464.2-201ENST00000510242 943 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AC022483.1-201ENST00000514020 567 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 MTATP6P9-201ENST00000515039 680 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 RN7SKP272-201ENST00000516988 232 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AC103783.1-201ENST00000520506 373 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3□□□□□ -1.93
VPS35Q96QK1 H3F3AP1-201ENST00000559984 334 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3□□□□□ -1.93
VPS35Q96QK1 AP001269.3-201ENST00000588718 329 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AC091057.3-201ENST00000602684 733 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AL139022.2-201ENST00000606934 443 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AC131235.4-201ENST00000609288 620 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AP000254.1-201ENST00000609934 520 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AC107075.1-201ENST00000613695 314 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AL590099.1-201ENST00000615276 138 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AL357080.1-201ENST00000617394 239 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AC109809.1-201ENST00000619665 545 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AC022306.3-201ENST00000619930 550 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AC011330.2-201ENST00000621680 635 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 AL445264.1-201ENST00000621719 171 ntBASIC3□□□□□ -1.93
VPS35Q96QK1 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3□□□□□ -1.93
VPS35Q96QK1 UGP2-231ENST00000627474 264 ntTSL 5 BASIC3□□□□□ -1.93
VPS35Q96QK1 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
VPS35Q96QK1 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3□□□□□ -1.93
VPS35Q96QK1 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3□□□□□ -1.93
VPS35Q96QK1 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3□□□□□ -1.93
VPS35Q96QK1 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC2.99□□□□□ -1.93
VPS35Q96QK1 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC2.99□□□□□ -1.93
VPS35Q96QK1 AL353743.1-202ENST00000431724 1695 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
VPS35Q96QK1 DEFB108F-201ENST00000344638 222 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 Y_RNA.234-201ENST00000364409 97 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 Y_RNA.311-201ENST00000365068 96 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 SNORA1.3-201ENST00000384676 136 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 SNORA46-201ENST00000384762 135 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 RNU6-952P-201ENST00000391164 108 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 ERMN-204ENST00000409925 556 ntTSL 4 BASIC2.99□□□□□ -1.93
VPS35Q96QK1 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS35Q96QK1 HSPE1P1-201ENST00000421494 318 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 TMEM167AP1-201ENST00000423409 219 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS35Q96QK1 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC2.99□□□□□ -1.93
VPS35Q96QK1 AL592447.1-201ENST00000447592 540 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 AC234775.1-201ENST00000454247 670 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 ZNF736P4Y-201ENST00000454995 1243 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 AC117440.1-201ENST00000474107 571 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 RNA5SP341-201ENST00000516261 117 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 RNU6-528P-201ENST00000516926 100 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 DEFB131D-201ENST00000526803 184 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 DEFB108D-201ENST00000527787 222 ntBASIC2.99□□□□□ -1.93
VPS35Q96QK1 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 158 ms