Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.33□□□□□ -1.88
VMP1Q96GC9 AC126124.2-201ENST00000413542 321 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 AC099548.1-201ENST00000421443 426 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 AL353678.1-201ENST00000422735 741 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 NANOGP5-201ENST00000424456 877 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 AP000907.1-201ENST00000428428 510 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 RPL35AP22-201ENST00000436855 335 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 BMI1P1-201ENST00000445879 941 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 RPL21P23-201ENST00000446654 460 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 PTENP1-201ENST00000447117 1215 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 AC092155.2-201ENST00000454675 477 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.33□□□□□ -1.88
VMP1Q96GC9 LARP1BP2-201ENST00000486594 519 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC3.33□□□□□ -1.88
VMP1Q96GC9 SLC25A15P5-201ENST00000508033 253 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.33□□□□□ -1.88
VMP1Q96GC9 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 RNU6-579P-201ENST00000516879 102 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 AP006245.1-201ENST00000522549 120 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.33□□□□□ -1.88
VMP1Q96GC9 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.33□□□□□ -1.88
VMP1Q96GC9 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.33□□□□□ -1.88
VMP1Q96GC9 CCNG2P1-201ENST00000549521 1000 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC3.33□□□□□ -1.88
VMP1Q96GC9 AC068135.2-201ENST00000569293 1028 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.33□□□□□ -1.88
VMP1Q96GC9 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC3.33□□□□□ -1.88
VMP1Q96GC9 AC131902.3-201ENST00000611767 581 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC3.33□□□□□ -1.88
VMP1Q96GC9 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
VMP1Q96GC9 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
VMP1Q96GC9 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
VMP1Q96GC9 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.32□□□□□ -1.88
VMP1Q96GC9 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VMP1Q96GC9 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VMP1Q96GC9 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 RNU6-741P-201ENST00000383889 107 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 RNU6-636P-201ENST00000384598 107 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 RNU6-925P-201ENST00000384629 104 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 MIR7-3-201ENST00000384898 110 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 RSL24D1P1-201ENST00000404972 493 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 RNA5SP107-201ENST00000411358 122 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 AC093578.1-201ENST00000415219 368 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 AC245291.1-201ENST00000419501 328 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.32□□□□□ -1.88
VMP1Q96GC9 AC092047.1-201ENST00000424997 240 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 AL365496.1-201ENST00000426885 215 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 AC073063.1-201ENST00000434352 607 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.32□□□□□ -1.88
VMP1Q96GC9 AC092641.1-201ENST00000440229 772 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
VMP1Q96GC9 AL590639.1-201ENST00000456484 337 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 AC023598.1-201ENST00000472521 361 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 RPL7P18-201ENST00000478965 734 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.32□□□□□ -1.88
VMP1Q96GC9 RNA5SP291-201ENST00000517222 105 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 DUXAP2-201ENST00000519198 589 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 AC103843.2-201ENST00000530523 682 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 OR5B10P-201ENST00000532869 642 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.32□□□□□ -1.88
VMP1Q96GC9 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.32□□□□□ -1.88
VMP1Q96GC9 AC090888.1-201ENST00000561335 1141 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 AC091057.2-201ENST00000602594 792 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 RPP40P2-201ENST00000603596 712 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 AL596327.1-201ENST00000603629 213 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 AC103710.4-201ENST00000609301 899 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 AL133445.2-201ENST00000611191 527 ntBASIC3.32□□□□□ -1.88
VMP1Q96GC9 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
VMP1Q96GC9 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VMP1Q96GC9 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
VMP1Q96GC9 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.31□□□□□ -1.88
VMP1Q96GC9 AC022336.2-201ENST00000568966 2538 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.31□□□□□ -1.88
VMP1Q96GC9 AP000776.1-201ENST00000530032 1663 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 ZNF519P1-201ENST00000449011 1626 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 RNA5SP119-201ENST00000362715 117 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 RNU6-223P-201ENST00000362830 107 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 RNA5SP383-201ENST00000362934 120 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 U3.20-201ENST00000390909 217 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 RNA5SP171-201ENST00000391071 115 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 SNORA26.7-201ENST00000391288 122 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 RPL21P75-201ENST00000396599 483 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 RPL21P28-201ENST00000401418 483 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 AL590084.2-201ENST00000401481 382 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 AL592114.1-201ENST00000403842 483 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 HMGN1P24-201ENST00000412282 298 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.31□□□□□ -1.88
VMP1Q96GC9 AC083875.1-201ENST00000419509 405 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC3.31□□□□□ -1.88
VMP1Q96GC9 COX7BP2-201ENST00000437976 242 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 Z82210.1-201ENST00000440037 231 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 BNIP3P2-201ENST00000441221 577 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 DDX3P2-201ENST00000446138 111 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 AL358232.1-201ENST00000448030 501 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.31□□□□□ -1.88
VMP1Q96GC9 AP1S2P1-201ENST00000457344 379 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 RNU7-23P-201ENST00000459465 62 ntBASIC3.31□□□□□ -1.88
VMP1Q96GC9 RPL21P39-201ENST00000463605 483 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms