Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC105914.1-201ENST00000511798 226 ntBASIC4.86□□□□□ -1.63
SMC1BQ8NDV3 RNU6-445P-201ENST00000516949 107 ntBASIC4.86□□□□□ -1.63
SMC1BQ8NDV3 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.86□□□□□ -1.63
SMC1BQ8NDV3 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC4.86□□□□□ -1.63
SMC1BQ8NDV3 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.86□□□□□ -1.63
SMC1BQ8NDV3 AC007363.1-201ENST00000604736 620 ntBASIC4.86□□□□□ -1.63
SMC1BQ8NDV3 AL137843.1-201ENST00000605078 385 ntBASIC4.86□□□□□ -1.63
SMC1BQ8NDV3 OR6R2P-201ENST00000609216 300 ntBASIC4.86□□□□□ -1.63
SMC1BQ8NDV3 MIR6868-201ENST00000611215 58 ntBASIC4.86□□□□□ -1.63
SMC1BQ8NDV3 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SMC1BQ8NDV3 AL008636.1-201ENST00000625038 1018 ntBASIC4.86□□□□□ -1.63
SMC1BQ8NDV3 AL159972.1-201ENST00000625150 448 ntBASIC4.86□□□□□ -1.63
SMC1BQ8NDV3 AC018529.3-201ENST00000624212 2254 ntBASIC4.86□□□□□ -1.63
SMC1BQ8NDV3 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SMC1BQ8NDV3 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 RNU1-108P-201ENST00000362556 161 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 RNU6-1085P-201ENST00000363576 107 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 RNY4P14-201ENST00000363656 96 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 Y_RNA.256-201ENST00000364594 104 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 RNY4P16-201ENST00000364768 94 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 Y_RNA.510-201ENST00000384511 114 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 SNORD96B-201ENST00000386148 79 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 FGFR1OP2P1-201ENST00000395943 500 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 VDAC1P9-201ENST00000412766 841 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 ELOCP4-201ENST00000420090 333 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 WASF1P1-201ENST00000447560 1131 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 MTND2P24-201ENST00000453434 806 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 AC027673.1-201ENST00000456245 405 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 AP003034.1-201ENST00000534621 422 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 KC877982.1-201ENST00000602313 470 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 AC104458.1-201ENST00000608243 463 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 AL391813.2-201ENST00000609113 322 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 RDM1-219ENST00000615378 542 ntTSL 3 BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 AP006248.2-201ENST00000623309 592 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 BMS1P21-201ENST00000634565 365 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 AC244258.1-201ENST00000637553 1071 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 AL672167.1-203ENST00000641299 2975 ntBASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
SMC1BQ8NDV3 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 RNU6-989P-201ENST00000362756 107 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 RNU6-356P-201ENST00000384140 107 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 SNORD3H-201ENST00000384486 214 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 SNORA74C-2-201ENST00000411179 201 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 ELOCP14-201ENST00000428070 331 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 CKS1BP5-201ENST00000434172 273 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 ELOCP7-201ENST00000439968 331 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 AC108059.3-201ENST00000456388 214 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 RPL21P103-201ENST00000479921 488 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 FCF1P3-201ENST00000496394 590 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 RN7SKP18-201ENST00000516005 275 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 AC006064.5-201ENST00000541782 248 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 AL512310.1-201ENST00000548639 172 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 AL157687.1-201ENST00000554853 619 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 SUB1P2-201ENST00000556401 297 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 COX6CP3-201ENST00000580869 223 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 MIR548S-201ENST00000581352 82 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 AC008277.2-201ENST00000605196 797 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 AL355073.2-201ENST00000612106 557 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 AC091905.2-201ENST00000623143 306 ntBASIC4.84□□□□□ -1.63
SMC1BQ8NDV3 AC112204.3-201ENST00000623822 332 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms