Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC093815.1-201ENST00000508637 280 ntBASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 RNU6-496P-201ENST00000516145 99 ntBASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 AP004607.2-201ENST00000533949 322 ntBASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 MDM2-232ENST00000544561 213 ntTSL 5 BASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 AC092490.3-201ENST00000545370 572 ntBASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 MIR4308-201ENST00000580634 81 ntBASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 AL121917.1-203ENST00000605534 577 ntBASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 MIR7973-1-201ENST00000614683 76 ntBASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 AC233981.2-201ENST00000611524 1614 ntBASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
NPAS3Q8IXF0 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 RNU6-700P-201ENST00000391043 107 ntBASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 TMEM167AP1-201ENST00000423409 219 ntBASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 AL591043.1-201ENST00000432461 424 ntBASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 AL159987.2-201ENST00000432754 307 ntBASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 RPL21P103-201ENST00000479921 488 ntBASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 AC010409.1-201ENST00000487382 476 ntBASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 AP002001.1-203ENST00000534002 267 ntBASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 MIR3976-201ENST00000606807 139 ntBASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 AC097372.5-201ENST00000623665 376 ntBASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC5.62□□□□□ -1.51
NPAS3Q8IXF0 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 XIAPP3-201ENST00000312918 795 ntBASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 RNY4P18-201ENST00000391107 89 ntBASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 RPL12P17-201ENST00000432393 498 ntBASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 Y_RNA.638-201ENST00000459374 113 ntBASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 AC091180.1-201ENST00000462104 372 ntBASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 RN7SL860P-201ENST00000473738 223 ntBASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 AC108043.1-201ENST00000512696 574 ntBASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 AC093853.1-201ENST00000515689 483 ntBASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 RNA5SP228-201ENST00000516232 133 ntBASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 AC100870.1-201ENST00000522035 505 ntBASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 AC100784.1-201ENST00000522790 310 ntBASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 AL133271.1-201ENST00000538229 291 ntBASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 AC024940.3-201ENST00000538551 316 ntBASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 AC060780.2-201ENST00000589047 198 ntBASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 AL160281.1-201ENST00000605307 311 ntBASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 BRDTP1-201ENST00000605735 677 ntBASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 Y_RNA.802-201ENST00000614892 130 ntBASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 TUG1_4.1-201ENST00000619464 181 ntBASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.61□□□□□ -1.51
NPAS3Q8IXF0 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 AC007785.2-201ENST00000598627 1916 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 AC010332.2-201ENST00000613083 1904 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms