Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC027575.1-201ENST00000481064 460 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AC023790.1-201ENST00000482174 347 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AC096751.1-202ENST00000502691 1067 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.05□□□□□ -2.24
LINC00643Q86TS7 ANXA2P1-201ENST00000505539 926 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 CBX3P3-201ENST00000508108 532 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AC107393.1-201ENST00000512403 346 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC1.05□□□□□ -2.24
LINC00643Q86TS7 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AC084033.1-201ENST00000550830 633 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC1.05□□□□□ -2.24
LINC00643Q86TS7 FAM60BP-201ENST00000578364 658 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC1.05□□□□□ -2.24
LINC00643Q86TS7 ELOCP29-201ENST00000588193 334 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
LINC00643Q86TS7 VN1R92P-201ENST00000598511 928 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AC128687.1-201ENST00000605304 619 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AC068944.2-201ENST00000610373 403 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 MIR6830-201ENST00000636015 70 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.05□□□□□ -2.24
LINC00643Q86TS7 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC1.05□□□□□ -2.24
LINC00643Q86TS7 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 RNU6-1159P-201ENST00000362933 107 ntBASIC1.04□□□□□ -2.24
LINC00643Q86TS7 RNU6-244P-201ENST00000391028 104 ntBASIC1.04□□□□□ -2.24
LINC00643Q86TS7 RNA5SP56-201ENST00000410277 118 ntBASIC1.04□□□□□ -2.24
LINC00643Q86TS7 NFU1P1-201ENST00000413128 774 ntBASIC1.04□□□□□ -2.24
LINC00643Q86TS7 Z85995.1-201ENST00000415547 335 ntBASIC1.04□□□□□ -2.24
LINC00643Q86TS7 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 FGF7P5-201ENST00000441829 291 ntBASIC1.04□□□□□ -2.24
LINC00643Q86TS7 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 AC044797.1-201ENST00000445744 679 ntBASIC1.04□□□□□ -2.24
LINC00643Q86TS7 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 AK6-203ENST00000502819 743 ntTSL 5 BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 CCNHP1-201ENST00000513311 678 ntBASIC1.04□□□□□ -2.24
LINC00643Q86TS7 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 MEG8-218ENST00000556720 456 ntTSL 3 BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 AL669831.4-202ENST00000590817 238 ntBASIC1.04□□□□□ -2.24
LINC00643Q86TS7 AC007938.3-201ENST00000604965 623 ntBASIC1.04□□□□□ -2.24
LINC00643Q86TS7 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 AC011330.2-201ENST00000621680 635 ntBASIC1.04□□□□□ -2.24
LINC00643Q86TS7 AC027309.3-201ENST00000623419 351 ntBASIC1.04□□□□□ -2.24
LINC00643Q86TS7 AP006248.3-201ENST00000623580 594 ntBASIC1.04□□□□□ -2.24
LINC00643Q86TS7 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 AC111188.2-201ENST00000529697 1387 ntBASIC1.04□□□□□ -2.24
LINC00643Q86TS7 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
LINC00643Q86TS7 AL161722.3-201ENST00000605789 2983 ntBASIC1.04□□□□□ -2.24
LINC00643Q86TS7 MTND5P10-201ENST00000603719 1809 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 WWP1P1-201ENST00000466609 2769 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 RNU6-374P-201ENST00000364146 108 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 Y_RNA.493-201ENST00000384422 102 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 SNORA51.12-201ENST00000384448 134 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 RNU1-148P-201ENST00000384472 162 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 MIR320A-201ENST00000385302 82 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 RNU6ATAC-201ENST00000408749 126 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.03□□□□□ -2.24
LINC00643Q86TS7 RPL24P2-201ENST00000421023 475 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC1.03□□□□□ -2.24
LINC00643Q86TS7 SNORD109B-201ENST00000458961 67 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 SNORD109A-201ENST00000459128 67 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 snoU13.28-201ENST00000459235 104 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 RN7SL636P-201ENST00000497504 294 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 NDUFA5P12-201ENST00000503796 343 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC1.03□□□□□ -2.24
LINC00643Q86TS7 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC1.03□□□□□ -2.24
LINC00643Q86TS7 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.03□□□□□ -2.24
LINC00643Q86TS7 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC1.03□□□□□ -2.24
LINC00643Q86TS7 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC1.03□□□□□ -2.24
LINC00643Q86TS7 AC090888.3-201ENST00000558917 509 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 AC090751.1-201ENST00000566966 267 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC1.03□□□□□ -2.24
LINC00643Q86TS7 MIR5571-201ENST00000577998 113 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 AC124283.4-201ENST00000581815 456 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 RPP40P2-201ENST00000603596 712 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 AC021749.1-201ENST00000604322 607 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 AC007038.2-201ENST00000608095 740 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 Y_RNA.783-201ENST00000613546 102 ntBASIC1.03□□□□□ -2.24
LINC00643Q86TS7 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC1.03□□□□□ -2.24
LINC00643Q86TS7 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
LINC00643Q86TS7 MT-TC-201ENST00000387405 66 ntBASIC1.02□□□□□ -2.25
LINC00643Q86TS7 SNORA48.7-201ENST00000391302 135 ntBASIC1.02□□□□□ -2.25
LINC00643Q86TS7 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC1.02□□□□□ -2.25
LINC00643Q86TS7 AC244453.4-201ENST00000419150 388 ntBASIC1.02□□□□□ -2.25
LINC00643Q86TS7 AC246680.2-201ENST00000422106 389 ntBASIC1.02□□□□□ -2.25
LINC00643Q86TS7 AC093106.2-201ENST00000428212 385 ntBASIC1.02□□□□□ -2.25
LINC00643Q86TS7 AC079780.1-201ENST00000428259 207 ntBASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 125.5 ms