Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS53Q5VIR6 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS53Q5VIR6 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
VPS53Q5VIR6 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
VPS53Q5VIR6 FARSBP1-201ENST00000435808 1778 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
VPS53Q5VIR6 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
VPS53Q5VIR6 RNU6-263P-201ENST00000363811 107 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 RNU6-335P-201ENST00000364563 113 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 BTF3P7-201ENST00000407097 488 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 RN7SKP202-201ENST00000410439 330 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 MTCO1P17-201ENST00000411522 491 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
VPS53Q5VIR6 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS53Q5VIR6 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS53Q5VIR6 PSPHP1-201ENST00000450062 261 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 BX322784.1-201ENST00000455793 1077 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 MTCO1P42-201ENST00000457379 726 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 RPS20P24-201ENST00000457473 361 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS53Q5VIR6 AC020593.1-201ENST00000507399 299 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS53Q5VIR6 AC005921.1-201ENST00000510589 286 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS53Q5VIR6 RNU6-314P-201ENST00000516574 104 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
VPS53Q5VIR6 AC023632.4-201ENST00000517783 191 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 AC022861.1-201ENST00000522981 663 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
VPS53Q5VIR6 AP004242.1-201ENST00000533701 349 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS53Q5VIR6 SNORA59B-202ENST00000578183 701 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 MIR3682-201ENST00000581338 84 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS53Q5VIR6 RPL23AP92-201ENST00000603609 255 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 AC090970.3-201ENST00000612566 866 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 UBE2Q2P2-203ENST00000613592 761 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 AC136475.10-201ENST00000620253 385 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 AL356321.1-201ENST00000621360 228 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 NUP58P1-201ENST00000502546 1738 ntBASIC4.45□□□□□ -1.7
VPS53Q5VIR6 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS53Q5VIR6 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
VPS53Q5VIR6 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS53Q5VIR6 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 RNA5SP51-201ENST00000364750 119 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 RNA5SP189-201ENST00000364920 115 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 MIR554-201ENST00000384874 96 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 RNA5SP424-201ENST00000390988 115 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 RNU6-821P-201ENST00000390995 107 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AL590704.1-201ENST00000402856 794 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 CIR1P3-201ENST00000405137 479 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 MIR1183-201ENST00000408856 89 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 RNU4-78P-201ENST00000410940 126 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 SNORA57.3-201ENST00000411095 141 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 RAB9AP3-201ENST00000412737 573 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AMD1P2-201ENST00000412936 992 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 MTCO2P5-201ENST00000422621 426 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AC002381.1-201ENST00000447049 280 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AP000542.1-201ENST00000448473 371 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 RAB9AP1-201ENST00000449393 573 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 GAPDHP17-201ENST00000449858 1001 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 UBE2CP3-201ENST00000502715 450 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AC008489.1-201ENST00000524271 483 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AC099489.2-201ENST00000574976 260 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AC091965.4-201ENST00000607691 587 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AP001596.2-201ENST00000608410 312 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AL592295.2-201ENST00000612578 206 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AC124864.2-201ENST00000624736 186 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 AC244258.1-201ENST00000637553 1071 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 ELF2P3-201ENST00000445099 1506 ntBASIC4.44□□□□□ -1.7
VPS53Q5VIR6 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS53Q5VIR6 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 CCT4P2-201ENST00000233836 1548 ntBASIC4.43□□□□□ -1.7
VPS53Q5VIR6 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS53Q5VIR6 Y_RNA.554-201ENST00000384672 102 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 132.5 ms