Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC078974.1-201ENST00000411597 223 ntBASIC3.09□□□□□ -1.91
CDX1P47902 RPL7P8-201ENST00000411964 730 ntBASIC3.09□□□□□ -1.91
CDX1P47902 Z99497.1-201ENST00000421282 135 ntBASIC3.09□□□□□ -1.91
CDX1P47902 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.09□□□□□ -1.91
CDX1P47902 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.09□□□□□ -1.91
CDX1P47902 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC3.09□□□□□ -1.91
CDX1P47902 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.09□□□□□ -1.91
CDX1P47902 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.09□□□□□ -1.91
CDX1P47902 AC009237.8-201ENST00000445492 379 ntBASIC3.09□□□□□ -1.91
CDX1P47902 KATNBL1P6-201ENST00000453433 915 ntBASIC3.09□□□□□ -1.91
CDX1P47902 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.09□□□□□ -1.91
CDX1P47902 RPS20P20-201ENST00000460498 340 ntBASIC3.09□□□□□ -1.91
CDX1P47902 RPL21P11-201ENST00000461458 483 ntBASIC3.09□□□□□ -1.91
CDX1P47902 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.09□□□□□ -1.91
CDX1P47902 AC020893.1-201ENST00000502452 580 ntBASIC3.09□□□□□ -1.91
CDX1P47902 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.09□□□□□ -1.91
CDX1P47902 AC006499.5-201ENST00000505037 514 ntBASIC3.09□□□□□ -1.91
CDX1P47902 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC3.09□□□□□ -1.91
CDX1P47902 MTND4LP31-201ENST00000514859 294 ntBASIC3.09□□□□□ -1.91
CDX1P47902 RNU6-1003P-201ENST00000517099 105 ntBASIC3.09□□□□□ -1.91
CDX1P47902 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.09□□□□□ -1.91
CDX1P47902 RPL12P22-201ENST00000519073 490 ntBASIC3.09□□□□□ -1.91
CDX1P47902 AC106038.2-201ENST00000520706 568 ntBASIC3.09□□□□□ -1.91
CDX1P47902 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.09□□□□□ -1.91
CDX1P47902 CYCSP30-201ENST00000546447 172 ntBASIC3.09□□□□□ -1.91
CDX1P47902 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC3.09□□□□□ -1.91
CDX1P47902 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.09□□□□□ -1.91
CDX1P47902 ROCK1P1-201ENST00000573767 549 ntBASIC3.09□□□□□ -1.91
CDX1P47902 MIR3915-201ENST00000578518 97 ntBASIC3.09□□□□□ -1.91
CDX1P47902 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.09□□□□□ -1.91
CDX1P47902 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
CDX1P47902 AC103710.1-201ENST00000610003 901 ntBASIC3.09□□□□□ -1.91
CDX1P47902 AC010133.1-201ENST00000615809 842 ntBASIC3.09□□□□□ -1.91
CDX1P47902 AC027807.2-201ENST00000616099 408 ntBASIC3.09□□□□□ -1.91
CDX1P47902 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.09□□□□□ -1.91
CDX1P47902 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.09□□□□□ -1.91
CDX1P47902 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.09□□□□□ -1.91
CDX1P47902 MTND5P27-201ENST00000428871 1720 ntBASIC3.09□□□□□ -1.91
CDX1P47902 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.09□□□□□ -1.91
CDX1P47902 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
CDX1P47902 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.09□□□□□ -1.92
CDX1P47902 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
CDX1P47902 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.09□□□□□ -1.92
CDX1P47902 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CDX1P47902 RNU5F-6P-201ENST00000362979 116 ntBASIC3.08□□□□□ -1.92
CDX1P47902 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.08□□□□□ -1.92
CDX1P47902 RNA5SP97-201ENST00000365006 84 ntBASIC3.08□□□□□ -1.92
CDX1P47902 RNU6-805P-201ENST00000365643 106 ntBASIC3.08□□□□□ -1.92
CDX1P47902 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.08□□□□□ -1.92
CDX1P47902 RNU6-213P-201ENST00000384051 104 ntBASIC3.08□□□□□ -1.92
CDX1P47902 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
CDX1P47902 AC110754.1-201ENST00000399740 601 ntBASIC3.08□□□□□ -1.92
CDX1P47902 RPS20P2-201ENST00000402520 389 ntBASIC3.08□□□□□ -1.92
CDX1P47902 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.08□□□□□ -1.92
CDX1P47902 RN7SKP202-201ENST00000410439 330 ntBASIC3.08□□□□□ -1.92
CDX1P47902 RNA5SP293-201ENST00000410527 113 ntBASIC3.08□□□□□ -1.92
CDX1P47902 RPL21P24-201ENST00000413752 448 ntBASIC3.08□□□□□ -1.92
CDX1P47902 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.08□□□□□ -1.92
CDX1P47902 NDUFB4P7-201ENST00000423198 363 ntBASIC3.08□□□□□ -1.92
CDX1P47902 AL390023.1-201ENST00000428836 262 ntBASIC3.08□□□□□ -1.92
CDX1P47902 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.08□□□□□ -1.92
CDX1P47902 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC3.08□□□□□ -1.92
CDX1P47902 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.08□□□□□ -1.92
CDX1P47902 AC118469.1-201ENST00000442943 488 ntBASIC3.08□□□□□ -1.92
CDX1P47902 BMI1P1-201ENST00000445879 941 ntBASIC3.08□□□□□ -1.92
CDX1P47902 AL590664.1-201ENST00000448065 339 ntBASIC3.08□□□□□ -1.92
CDX1P47902 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.08□□□□□ -1.92
CDX1P47902 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC3.08□□□□□ -1.92
CDX1P47902 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.08□□□□□ -1.92
CDX1P47902 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.08□□□□□ -1.92
CDX1P47902 HMGN2P13-201ENST00000476476 274 ntBASIC3.08□□□□□ -1.92
CDX1P47902 BET1P1-201ENST00000482276 359 ntBASIC3.08□□□□□ -1.92
CDX1P47902 DSTNP2-201ENST00000504533 515 ntBASIC3.08□□□□□ -1.92
CDX1P47902 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.08□□□□□ -1.92
CDX1P47902 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
CDX1P47902 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
CDX1P47902 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.08□□□□□ -1.92
CDX1P47902 SCARNA15.2-201ENST00000516409 127 ntBASIC3.08□□□□□ -1.92
CDX1P47902 RNU6-1256P-201ENST00000516539 103 ntBASIC3.08□□□□□ -1.92
CDX1P47902 RNA5SP179-201ENST00000517284 121 ntBASIC3.08□□□□□ -1.92
CDX1P47902 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.08□□□□□ -1.92
CDX1P47902 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.08□□□□□ -1.92
CDX1P47902 OSBPL9P5-201ENST00000542581 171 ntBASIC3.08□□□□□ -1.92
CDX1P47902 AC011602.1-201ENST00000546484 331 ntBASIC3.08□□□□□ -1.92
CDX1P47902 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.08□□□□□ -1.92
CDX1P47902 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.08□□□□□ -1.92
CDX1P47902 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.08□□□□□ -1.92
CDX1P47902 AC022968.1-201ENST00000567372 442 ntBASIC3.08□□□□□ -1.92
CDX1P47902 AC109446.2-201ENST00000567872 497 ntBASIC3.08□□□□□ -1.92
CDX1P47902 AC135628.1-201ENST00000568867 534 ntBASIC3.08□□□□□ -1.92
CDX1P47902 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.08□□□□□ -1.92
CDX1P47902 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.08□□□□□ -1.92
CDX1P47902 AL109618.2-201ENST00000605527 211 ntBASIC3.08□□□□□ -1.92
CDX1P47902 AL355472.4-201ENST00000610233 626 ntBASIC3.08□□□□□ -1.92
CDX1P47902 AC090970.3-201ENST00000612566 866 ntBASIC3.08□□□□□ -1.92
CDX1P47902 AC013476.2-201ENST00000614456 459 ntBASIC3.08□□□□□ -1.92
CDX1P47902 AC091905.1-201ENST00000624400 311 ntBASIC3.08□□□□□ -1.92
CDX1P47902 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.08□□□□□ -1.92
CDX1P47902 AC021755.1-201ENST00000559747 1447 ntBASIC3.08□□□□□ -1.92
CDX1P47902 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms