Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC106900.2-201ENST00000604994 317 ntBASIC3.16□□□□□ -1.9
TNFRSF4P43489 AL034351.1-201ENST00000605288 668 ntBASIC3.16□□□□□ -1.9
TNFRSF4P43489 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.16□□□□□ -1.9
TNFRSF4P43489 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
TNFRSF4P43489 DDX43P2-201ENST00000604753 1354 ntBASIC3.15□□□□□ -1.9
TNFRSF4P43489 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
TNFRSF4P43489 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.15□□□□□ -1.9
TNFRSF4P43489 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
TNFRSF4P43489 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
TNFRSF4P43489 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
TNFRSF4P43489 FRG1BP-201ENST00000278882 761 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 RPL7P26-201ENST00000333817 754 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 MIR22-201ENST00000362190 85 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
TNFRSF4P43489 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.15□□□□□ -1.91
TNFRSF4P43489 ZYG11AP1-201ENST00000430329 837 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 HMGN2P20-201ENST00000437531 273 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 SNRPEP7-201ENST00000438350 220 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 AC002381.1-201ENST00000447049 280 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.15□□□□□ -1.91
TNFRSF4P43489 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC3.15□□□□□ -1.91
TNFRSF4P43489 AC234775.1-201ENST00000454247 670 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 USP9YP10-201ENST00000454868 628 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 AC012181.1-201ENST00000479895 423 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 OR2A20P-203ENST00000498397 1268 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 MTCYBP35-201ENST00000503630 1137 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 VN1R104P-201ENST00000505115 1009 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.15□□□□□ -1.91
TNFRSF4P43489 PCBP2P3-201ENST00000509726 843 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.15□□□□□ -1.91
TNFRSF4P43489 ARL2BPP6-201ENST00000512757 439 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.15□□□□□ -1.91
TNFRSF4P43489 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.15□□□□□ -1.91
TNFRSF4P43489 MRPS36P3-201ENST00000519284 130 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 HIGD1AP10-201ENST00000527837 282 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC3.15□□□□□ -1.91
TNFRSF4P43489 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.15□□□□□ -1.91
TNFRSF4P43489 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.15□□□□□ -1.91
TNFRSF4P43489 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC3.15□□□□□ -1.91
TNFRSF4P43489 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.15□□□□□ -1.91
TNFRSF4P43489 AC011451.2-201ENST00000604303 598 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 AL033523.1-201ENST00000605153 153 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 AL590099.1-201ENST00000615276 138 ntBASIC3.15□□□□□ -1.91
TNFRSF4P43489 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
TNFRSF4P43489 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
TNFRSF4P43489 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
TNFRSF4P43489 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
TNFRSF4P43489 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
TNFRSF4P43489 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
TNFRSF4P43489 FAM35DP-201ENST00000323387 2712 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
TNFRSF4P43489 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
TNFRSF4P43489 AL161781.1-201ENST00000354277 403 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 MIR30E-201ENST00000362104 92 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 Y_RNA.234-201ENST00000364409 97 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 MIR591-201ENST00000385290 95 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 AMD1P2-201ENST00000412936 992 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 AC109780.2-201ENST00000413467 845 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.14□□□□□ -1.91
TNFRSF4P43489 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.14□□□□□ -1.91
TNFRSF4P43489 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.14□□□□□ -1.91
TNFRSF4P43489 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.14□□□□□ -1.91
TNFRSF4P43489 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.14□□□□□ -1.91
TNFRSF4P43489 AC022018.1-201ENST00000430685 241 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 NEK4P1-201ENST00000433383 879 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.14□□□□□ -1.91
TNFRSF4P43489 MTCO2P20-201ENST00000437339 673 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 AC025750.2-201ENST00000442609 450 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.14□□□□□ -1.91
TNFRSF4P43489 UBE2DNL-203ENST00000474922 222 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 AC108860.1-201ENST00000484521 383 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.14□□□□□ -1.91
TNFRSF4P43489 TXNP6-201ENST00000510190 310 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 AC017037.2-201ENST00000513850 890 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 SNORA3.4-201ENST00000515969 96 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 RNU5A-4P-201ENST00000516588 111 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 RN7SKP272-201ENST00000516988 232 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 COX6CP8-201ENST00000522620 226 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 AC092851.1-201ENST00000535964 478 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 MTND3P12-201ENST00000559068 328 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.14□□□□□ -1.91
TNFRSF4P43489 AP005205.1-201ENST00000563503 508 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC3.14□□□□□ -1.91
TNFRSF4P43489 MIR4474-201ENST00000579189 78 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.14□□□□□ -1.91
TNFRSF4P43489 AL109653.1-201ENST00000603091 248 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 AL158042.1-201ENST00000605338 460 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC3.14□□□□□ -1.91
TNFRSF4P43489 AP002826.1-201ENST00000608835 315 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 AP002791.1-201ENST00000623291 381 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 AC091903.1-201ENST00000624322 454 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 AL513185.3-201ENST00000433335 1300 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 FAM35BP-202ENST00000497389 3337 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.14□□□□□ -1.91
TNFRSF4P43489 MTCO1P9-201ENST00000505577 1534 ntBASIC3.14□□□□□ -1.91
TNFRSF4P43489 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
TNFRSF4P43489 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
TNFRSF4P43489 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
TNFRSF4P43489 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 191 ms