Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.01□□□□□ -1.61
COL8A1P27658 TOMM20P4-201ENST00000427861 435 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.01□□□□□ -1.61
COL8A1P27658 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC5.01□□□□□ -1.61
COL8A1P27658 AL450023.1-201ENST00000450868 751 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 RPL37P6-201ENST00000460682 294 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.01□□□□□ -1.61
COL8A1P27658 AC133134.1-201ENST00000466800 359 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 HMGB1P25-201ENST00000468402 607 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 RN7SL817P-201ENST00000480777 288 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 AC092824.1-201ENST00000483524 576 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 HMGB1P21-201ENST00000502313 581 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.01□□□□□ -1.61
COL8A1P27658 AC025755.1-201ENST00000521306 278 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC5.01□□□□□ -1.61
COL8A1P27658 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC5.01□□□□□ -1.61
COL8A1P27658 AC126177.5-201ENST00000549599 178 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC5.01□□□□□ -1.61
COL8A1P27658 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.01□□□□□ -1.61
COL8A1P27658 MIR4679-2-201ENST00000578358 77 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 AL008718.3-201ENST00000610217 321 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 AC240442.1-201ENST00000616055 283 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC5.01□□□□□ -1.61
COL8A1P27658 U1.31-201ENST00000620022 160 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.01□□□□□ -1.61
COL8A1P27658 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.01□□□□□ -1.61
COL8A1P27658 AC105235.1-201ENST00000623208 1816 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL8A1P27658 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.01□□□□□ -1.61
COL8A1P27658 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL8A1P27658 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL8A1P27658 CDC27P2-201ENST00000425026 1922 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL8A1P27658 MTND5P9-201ENST00000503854 1755 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
COL8A1P27658 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL8A1P27658 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL8A1P27658 AC011933.2-201ENST00000578539 2790 ntBASIC5□□□□□ -1.61
COL8A1P27658 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC5□□□□□ -1.61
COL8A1P27658 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5□□□□□ -1.61
COL8A1P27658 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5□□□□□ -1.61
COL8A1P27658 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
COL8A1P27658 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC5□□□□□ -1.61
COL8A1P27658 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL8A1P27658 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
COL8A1P27658 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC5□□□□□ -1.61
COL8A1P27658 RNA5SP267-201ENST00000364893 126 ntBASIC5□□□□□ -1.61
COL8A1P27658 RNU1-43P-201ENST00000365052 165 ntBASIC5□□□□□ -1.61
COL8A1P27658 SNORD63-201ENST00000384262 68 ntBASIC5□□□□□ -1.61
COL8A1P27658 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC5□□□□□ -1.61
COL8A1P27658 RNU6-754P-201ENST00000391166 107 ntBASIC5□□□□□ -1.61
COL8A1P27658 HIST1H3PS1-201ENST00000404612 417 ntBASIC5□□□□□ -1.61
COL8A1P27658 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5□□□□□ -1.61
COL8A1P27658 NUTF2P7-201ENST00000453086 375 ntBASIC5□□□□□ -1.61
COL8A1P27658 AC079168.2-201ENST00000453977 416 ntBASIC5□□□□□ -1.61
COL8A1P27658 AC006511.1-201ENST00000470614 315 ntBASIC5□□□□□ -1.61
COL8A1P27658 RN7SL481P-201ENST00000477764 299 ntBASIC5□□□□□ -1.61
COL8A1P27658 AC008897.1-201ENST00000494006 347 ntBASIC5□□□□□ -1.61
COL8A1P27658 COX7A2P2-201ENST00000505291 250 ntBASIC5□□□□□ -1.61
COL8A1P27658 AC104057.1-201ENST00000515547 497 ntBASIC5□□□□□ -1.61
COL8A1P27658 MIR2355-201ENST00000517199 87 ntBASIC5□□□□□ -1.61
COL8A1P27658 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5□□□□□ -1.61
COL8A1P27658 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC5□□□□□ -1.61
COL8A1P27658 DEFB108D-201ENST00000527787 222 ntBASIC5□□□□□ -1.61
COL8A1P27658 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC5□□□□□ -1.61
COL8A1P27658 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5□□□□□ -1.61
COL8A1P27658 AC008745.1-201ENST00000604064 271 ntBASIC5□□□□□ -1.61
COL8A1P27658 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
COL8A1P27658 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC5□□□□□ -1.61
COL8A1P27658 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5□□□□□ -1.61
COL8A1P27658 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
COL8A1P27658 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL8A1P27658 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC5□□□□□ -1.61
COL8A1P27658 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
COL8A1P27658 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
COL8A1P27658 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
COL8A1P27658 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5□□□□□ -1.61
COL8A1P27658 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5□□□□□ -1.61
COL8A1P27658 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5□□□□□ -1.61
COL8A1P27658 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL8A1P27658 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
COL8A1P27658 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
COL8A1P27658 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL8A1P27658 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
COL8A1P27658 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL8A1P27658 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL8A1P27658 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL8A1P27658 Y_RNA.71-201ENST00000362892 104 ntBASIC4.99□□□□□ -1.61
COL8A1P27658 Y_RNA.218-201ENST00000364218 104 ntBASIC4.99□□□□□ -1.61
COL8A1P27658 RN7SKP186-201ENST00000365371 303 ntBASIC4.99□□□□□ -1.61
COL8A1P27658 SNORA40-201ENST00000388090 126 ntBASIC4.99□□□□□ -1.61
COL8A1P27658 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.99□□□□□ -1.61
COL8A1P27658 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC4.99□□□□□ -1.61
COL8A1P27658 AC023141.8-201ENST00000442554 208 ntBASIC4.99□□□□□ -1.61
COL8A1P27658 NOP56P2-201ENST00000447491 769 ntBASIC4.99□□□□□ -1.61
COL8A1P27658 snoU13.20-201ENST00000459180 104 ntBASIC4.99□□□□□ -1.61
COL8A1P27658 RPL23AP65-201ENST00000475608 468 ntBASIC4.99□□□□□ -1.61
COL8A1P27658 RN7SL165P-201ENST00000477476 291 ntBASIC4.99□□□□□ -1.61
COL8A1P27658 AC016065.2-201ENST00000514530 444 ntBASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms