Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.33□□□□□ -1.88
SIX3O95343 MFSD8-233ENST00000641482 4860 ntBASIC3.33□□□□□ -1.88
SIX3O95343 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SIX3O95343 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SIX3O95343 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SIX3O95343 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
SIX3O95343 AL672167.1-206ENST00000356293 943 ntBASIC3.33□□□□□ -1.88
SIX3O95343 RNA5SP88-201ENST00000365560 109 ntBASIC3.33□□□□□ -1.88
SIX3O95343 U3.26-201ENST00000391236 204 ntBASIC3.33□□□□□ -1.88
SIX3O95343 PIGPP2-201ENST00000411569 458 ntBASIC3.33□□□□□ -1.88
SIX3O95343 AC126124.2-201ENST00000413542 321 ntBASIC3.33□□□□□ -1.88
SIX3O95343 HMGB1P11-201ENST00000413899 637 ntBASIC3.33□□□□□ -1.88
SIX3O95343 BX842559.1-201ENST00000419615 532 ntBASIC3.33□□□□□ -1.88
SIX3O95343 XKRYP1-201ENST00000423438 492 ntBASIC3.33□□□□□ -1.88
SIX3O95343 AC010099.3-201ENST00000423896 409 ntBASIC3.33□□□□□ -1.88
SIX3O95343 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX3O95343 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.33□□□□□ -1.88
SIX3O95343 ARF4P2-201ENST00000430209 526 ntBASIC3.33□□□□□ -1.88
SIX3O95343 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.33□□□□□ -1.88
SIX3O95343 XKRYP2-201ENST00000432915 492 ntBASIC3.33□□□□□ -1.88
SIX3O95343 AC090774.1-201ENST00000435925 246 ntBASIC3.33□□□□□ -1.88
SIX3O95343 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX3O95343 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX3O95343 AL831737.1-201ENST00000441288 271 ntBASIC3.33□□□□□ -1.88
SIX3O95343 TXNP1-201ENST00000441872 371 ntBASIC3.33□□□□□ -1.88
SIX3O95343 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX3O95343 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.33□□□□□ -1.88
SIX3O95343 AL590664.1-201ENST00000448065 339 ntBASIC3.33□□□□□ -1.88
SIX3O95343 MTCO1P27-201ENST00000448269 226 ntBASIC3.33□□□□□ -1.88
SIX3O95343 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.33□□□□□ -1.88
SIX3O95343 SNORD105B-201ENST00000458770 79 ntBASIC3.33□□□□□ -1.88
SIX3O95343 HSPE1P6-201ENST00000479457 291 ntBASIC3.33□□□□□ -1.88
SIX3O95343 AC025518.1-201ENST00000479856 347 ntBASIC3.33□□□□□ -1.88
SIX3O95343 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.33□□□□□ -1.88
SIX3O95343 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX3O95343 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.33□□□□□ -1.88
SIX3O95343 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX3O95343 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX3O95343 ELOCP32-201ENST00000548625 324 ntBASIC3.33□□□□□ -1.88
SIX3O95343 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX3O95343 AC060771.1-201ENST00000582031 164 ntBASIC3.33□□□□□ -1.88
SIX3O95343 MIR4760-201ENST00000585040 80 ntBASIC3.33□□□□□ -1.88
SIX3O95343 AC008507.1-201ENST00000587506 734 ntBASIC3.33□□□□□ -1.88
SIX3O95343 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.33□□□□□ -1.88
SIX3O95343 AL137843.1-201ENST00000605078 385 ntBASIC3.33□□□□□ -1.88
SIX3O95343 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.33□□□□□ -1.88
SIX3O95343 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.33□□□□□ -1.88
SIX3O95343 AC099063.3-201ENST00000642066 185 ntBASIC3.33□□□□□ -1.88
SIX3O95343 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
SIX3O95343 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SIX3O95343 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SIX3O95343 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.33□□□□□ -1.88
SIX3O95343 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SIX3O95343 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SIX3O95343 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SIX3O95343 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SIX3O95343 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SIX3O95343 AL021368.2-201ENST00000606125 5352 ntBASIC3.32□□□□□ -1.88
SIX3O95343 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SIX3O95343 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SIX3O95343 Y_RNA.548-201ENST00000384656 105 ntBASIC3.32□□□□□ -1.88
SIX3O95343 RNU6-1197P-201ENST00000391183 107 ntBASIC3.32□□□□□ -1.88
SIX3O95343 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SIX3O95343 RNU6-1077P-201ENST00000410506 102 ntBASIC3.32□□□□□ -1.88
SIX3O95343 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.32□□□□□ -1.88
SIX3O95343 SYF2P2-201ENST00000417620 583 ntBASIC3.32□□□□□ -1.88
SIX3O95343 AC233728.2-201ENST00000425348 757 ntBASIC3.32□□□□□ -1.88
SIX3O95343 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.32□□□□□ -1.88
SIX3O95343 CYCSP4-201ENST00000429682 331 ntBASIC3.32□□□□□ -1.88
SIX3O95343 ATP5JP1-201ENST00000431631 322 ntBASIC3.32□□□□□ -1.88
SIX3O95343 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.32□□□□□ -1.88
SIX3O95343 NDUFB4P6-201ENST00000436819 366 ntBASIC3.32□□□□□ -1.88
SIX3O95343 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC3.32□□□□□ -1.88
SIX3O95343 AC008264.1-201ENST00000447612 367 ntBASIC3.32□□□□□ -1.88
SIX3O95343 AP000542.1-201ENST00000448473 371 ntBASIC3.32□□□□□ -1.88
SIX3O95343 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.32□□□□□ -1.88
SIX3O95343 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.32□□□□□ -1.88
SIX3O95343 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC3.32□□□□□ -1.88
SIX3O95343 RNU7-170P-201ENST00000459303 61 ntBASIC3.32□□□□□ -1.88
SIX3O95343 RPL23AP67-201ENST00000465341 474 ntBASIC3.32□□□□□ -1.88
SIX3O95343 POU5F1P7-201ENST00000508759 541 ntBASIC3.32□□□□□ -1.88
SIX3O95343 RNU1-95P-201ENST00000516357 160 ntBASIC3.32□□□□□ -1.88
SIX3O95343 RNU1-128P-201ENST00000516704 160 ntBASIC3.32□□□□□ -1.88
SIX3O95343 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC3.32□□□□□ -1.88
SIX3O95343 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
SIX3O95343 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.32□□□□□ -1.88
SIX3O95343 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.32□□□□□ -1.88
SIX3O95343 AC090888.2-201ENST00000559765 1144 ntBASIC3.32□□□□□ -1.88
SIX3O95343 AL031985.2-201ENST00000600955 480 ntBASIC3.32□□□□□ -1.88
SIX3O95343 AC079089.3-201ENST00000603094 673 ntBASIC3.32□□□□□ -1.88
SIX3O95343 AC103710.4-201ENST00000609301 899 ntBASIC3.32□□□□□ -1.88
SIX3O95343 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.32□□□□□ -1.88
SIX3O95343 AC009464.1-201ENST00000615731 469 ntBASIC3.32□□□□□ -1.88
SIX3O95343 MIR3651-201ENST00000630427 90 ntBASIC3.32□□□□□ -1.88
SIX3O95343 ZNF542P-204ENST00000482727 1305 ntBASIC3.32□□□□□ -1.88
SIX3O95343 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
SIX3O95343 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SIX3O95343 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
SIX3O95343 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SIX3O95343 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms