Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 DEFB131D-201ENST00000526803 184 ntBASIC3.08□□□□□ -1.92
SDC3O75056 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
SDC3O75056 MTCO2P15-201ENST00000532655 656 ntBASIC3.08□□□□□ -1.92
SDC3O75056 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
SDC3O75056 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC3.08□□□□□ -1.92
SDC3O75056 OR4H12P-201ENST00000556269 907 ntBASIC3.08□□□□□ -1.92
SDC3O75056 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.08□□□□□ -1.92
SDC3O75056 MTCO3P24-201ENST00000572729 782 ntBASIC3.08□□□□□ -1.92
SDC3O75056 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.08□□□□□ -1.92
SDC3O75056 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC3.08□□□□□ -1.92
SDC3O75056 AC093732.2-201ENST00000607950 274 ntBASIC3.08□□□□□ -1.92
SDC3O75056 AC097478.2-201ENST00000610572 514 ntBASIC3.08□□□□□ -1.92
SDC3O75056 AL596245.1-201ENST00000618994 362 ntBASIC3.08□□□□□ -1.92
SDC3O75056 AC023510.2-201ENST00000622162 746 ntBASIC3.08□□□□□ -1.92
SDC3O75056 AC068787.1-201ENST00000623908 691 ntBASIC3.08□□□□□ -1.92
SDC3O75056 CRYM-AS1-204ENST00000637983 556 ntBASIC3.08□□□□□ -1.92
SDC3O75056 AC006927.4-201ENST00000639187 543 ntBASIC3.08□□□□□ -1.92
SDC3O75056 CUL1P1-201ENST00000509510 2425 ntBASIC3.08□□□□□ -1.92
SDC3O75056 AP000776.1-201ENST00000530032 1663 ntBASIC3.08□□□□□ -1.92
SDC3O75056 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
SDC3O75056 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
SDC3O75056 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
SDC3O75056 SNORA71.1-201ENST00000364523 117 ntBASIC3.07□□□□□ -1.92
SDC3O75056 SNORA54-201ENST00000384281 123 ntBASIC3.07□□□□□ -1.92
SDC3O75056 SNORD67-201ENST00000390833 111 ntBASIC3.07□□□□□ -1.92
SDC3O75056 RNU6-882P-201ENST00000391025 103 ntBASIC3.07□□□□□ -1.92
SDC3O75056 RPL23AP29-201ENST00000397284 453 ntBASIC3.07□□□□□ -1.92
SDC3O75056 RPS3AP26-201ENST00000398259 784 ntBASIC3.07□□□□□ -1.92
SDC3O75056 MIR1284-201ENST00000408337 120 ntBASIC3.07□□□□□ -1.92
SDC3O75056 TPMTP2-201ENST00000414372 726 ntBASIC3.07□□□□□ -1.92
SDC3O75056 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC3O75056 MRPL50P2-201ENST00000416821 482 ntBASIC3.07□□□□□ -1.92
SDC3O75056 SSXP9-201ENST00000417503 292 ntBASIC3.07□□□□□ -1.92
SDC3O75056 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC3O75056 MTCO2P5-201ENST00000422621 426 ntBASIC3.07□□□□□ -1.92
SDC3O75056 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
SDC3O75056 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC3O75056 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.07□□□□□ -1.92
SDC3O75056 MTATP6P4-201ENST00000427725 675 ntBASIC3.07□□□□□ -1.92
SDC3O75056 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC3O75056 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC3O75056 AC016696.1-201ENST00000446949 318 ntBASIC3.07□□□□□ -1.92
SDC3O75056 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.07□□□□□ -1.92
SDC3O75056 RPL36AP33-201ENST00000450395 310 ntBASIC3.07□□□□□ -1.92
SDC3O75056 USP9YP25-201ENST00000457708 443 ntBASIC3.07□□□□□ -1.92
SDC3O75056 AC020699.1-201ENST00000505161 445 ntBASIC3.07□□□□□ -1.92
SDC3O75056 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC3O75056 AC026801.2-201ENST00000515352 425 ntBASIC3.07□□□□□ -1.92
SDC3O75056 SNORD59.2-201ENST00000516873 68 ntBASIC3.07□□□□□ -1.92
SDC3O75056 MIR2276-201ENST00000516886 89 ntBASIC3.07□□□□□ -1.92
SDC3O75056 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC3O75056 CYCSP2-201ENST00000558168 301 ntBASIC3.07□□□□□ -1.92
SDC3O75056 MIR4513-201ENST00000581077 86 ntBASIC3.07□□□□□ -1.92
SDC3O75056 AC091057.2-201ENST00000602594 792 ntBASIC3.07□□□□□ -1.92
SDC3O75056 AC105148.1-201ENST00000604961 409 ntBASIC3.07□□□□□ -1.92
SDC3O75056 AC080013.3-201ENST00000606839 578 ntBASIC3.07□□□□□ -1.92
SDC3O75056 AP002826.1-201ENST00000608835 315 ntBASIC3.07□□□□□ -1.92
SDC3O75056 AC009570.1-201ENST00000609599 745 ntBASIC3.07□□□□□ -1.92
SDC3O75056 AL357080.1-201ENST00000617394 239 ntBASIC3.07□□□□□ -1.92
SDC3O75056 DDX43P2-201ENST00000604753 1354 ntBASIC3.07□□□□□ -1.92
SDC3O75056 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.07□□□□□ -1.92
SDC3O75056 AC004972.1-201ENST00000623934 2209 ntBASIC3.07□□□□□ -1.92
SDC3O75056 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
SDC3O75056 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
SDC3O75056 RNA5SP383-201ENST00000362934 120 ntBASIC3.06□□□□□ -1.92
SDC3O75056 DYNLT3P1-201ENST00000378574 347 ntBASIC3.06□□□□□ -1.92
SDC3O75056 AL356131.1-201ENST00000405826 414 ntBASIC3.06□□□□□ -1.92
SDC3O75056 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC3.06□□□□□ -1.92
SDC3O75056 HMGB1P49-201ENST00000418882 569 ntBASIC3.06□□□□□ -1.92
SDC3O75056 BEND7P1-201ENST00000422058 457 ntBASIC3.06□□□□□ -1.92
SDC3O75056 AL139421.1-201ENST00000423010 169 ntBASIC3.06□□□□□ -1.92
SDC3O75056 AC012498.1-201ENST00000424037 437 ntBASIC3.06□□□□□ -1.92
SDC3O75056 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC3.06□□□□□ -1.92
SDC3O75056 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.06□□□□□ -1.92
SDC3O75056 AL513185.3-201ENST00000433335 1300 ntBASIC3.06□□□□□ -1.92
SDC3O75056 AC107083.1-201ENST00000439643 279 ntBASIC3.06□□□□□ -1.92
SDC3O75056 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.06□□□□□ -1.92
SDC3O75056 AC005539.1-201ENST00000443768 1479 ntBASIC3.06□□□□□ -1.92
SDC3O75056 AL353691.1-201ENST00000451332 387 ntBASIC3.06□□□□□ -1.92
SDC3O75056 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.06□□□□□ -1.92
SDC3O75056 RNU7-136P-201ENST00000458819 69 ntBASIC3.06□□□□□ -1.92
SDC3O75056 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC3.06□□□□□ -1.92
SDC3O75056 KCTD9P5-201ENST00000504141 1170 ntBASIC3.06□□□□□ -1.92
SDC3O75056 VN1R104P-201ENST00000505115 1009 ntBASIC3.06□□□□□ -1.92
SDC3O75056 AC104090.1-201ENST00000506341 1171 ntBASIC3.06□□□□□ -1.92
SDC3O75056 AC010587.2-201ENST00000511727 448 ntBASIC3.06□□□□□ -1.92
SDC3O75056 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
SDC3O75056 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.06□□□□□ -1.92
SDC3O75056 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
SDC3O75056 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC3.06□□□□□ -1.92
SDC3O75056 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
SDC3O75056 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.06□□□□□ -1.92
SDC3O75056 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.06□□□□□ -1.92
SDC3O75056 H3F3AP1-201ENST00000559984 334 ntBASIC3.06□□□□□ -1.92
SDC3O75056 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC3.06□□□□□ -1.92
SDC3O75056 AC055876.1-202ENST00000567053 138 ntBASIC3.06□□□□□ -1.92
SDC3O75056 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.06□□□□□ -1.92
SDC3O75056 OR4K8P-201ENST00000578842 1048 ntBASIC3.06□□□□□ -1.92
SDC3O75056 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.06□□□□□ -1.92
SDC3O75056 DUXAP11-201ENST00000603858 526 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms