Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 TANK-205ENST00000405852 2155 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 SAMMSON-226ENST00000642089 1582 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 AC068254.2-201ENST00000623938 3577 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 PNPT1P2-201ENST00000456768 2050 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 RNU6-1040P-201ENST00000383974 107 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 MIR323B-201ENST00000385269 82 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 U3.30-201ENST00000391308 210 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 SSXP10-201ENST00000402595 565 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 DPH3P2-201ENST00000422618 250 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 AC073069.1-201ENST00000428657 441 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 ARL5AP4-201ENST00000430731 512 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 AL353597.2-202ENST00000434901 373 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 RPS5P7-201ENST00000456664 608 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 AC006511.1-201ENST00000470614 315 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 VN1R104P-201ENST00000505115 1009 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 IGLV3-26-201ENST00000520756 302 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 FKBP1BP1-201ENST00000553366 325 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 AL137100.2-201ENST00000555786 315 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 AC090751.1-201ENST00000566966 267 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 AC115085.1-201ENST00000588924 229 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 AL022099.1-201ENST00000604551 712 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 AC018889.1-201ENST00000605372 397 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 AC133104.2-201ENST00000615272 193 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 LINC00901.1-201ENST00000617252 152 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 AC068870.2-201ENST00000620635 389 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 OR52H1-202ENST00000641796 1061 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 AC097504.1-201ENST00000515103 2415 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 ZFRP1-201ENST00000457579 2970 ntBASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC39Q9UFE4 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 Y_RNA.447-201ENST00000384184 113 ntBASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 AL356968.1-201ENST00000416622 474 ntBASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 AL138799.3-201ENST00000438968 350 ntBASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 EIF4A1P11-201ENST00000451239 222 ntBASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 PCNPP5-201ENST00000452246 481 ntBASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 RPL23AP71-201ENST00000470966 469 ntBASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 AC004453.1-201ENST00000487895 408 ntBASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 RN7SL808P-201ENST00000496066 299 ntBASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 HSPD1P15-201ENST00000505573 1122 ntBASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 AC087854.1-201ENST00000519706 414 ntBASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 DYNLL1P4-201ENST00000549314 266 ntBASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 AC124068.1-201ENST00000563131 678 ntBASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 AC015912.2-201ENST00000571053 181 ntBASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 AC113195.1-201ENST00000579952 141 ntBASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 AC069061.3-201ENST00000582254 823 ntBASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 RPL7P50-201ENST00000600588 727 ntBASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC39Q9UFE4 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 AL450326.2-201ENST00000421913 1962 ntBASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 CDC27P3-201ENST00000635418 1910 ntBASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 THUMPD3P1-201ENST00000506556 1480 ntBASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 RNU4-48P-201ENST00000365559 182 ntBASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 RNU6-310P-201ENST00000384655 107 ntBASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 MTCO2P33-201ENST00000402100 465 ntBASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 RNU6-954P-201ENST00000411355 107 ntBASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms