Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RNU6-97P-201ENST00000363387 104 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 RNU6-931P-201ENST00000363850 107 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 RNU6-289P-201ENST00000364093 107 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 RNA5SP51-201ENST00000364750 119 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AC024082.2-201ENST00000434771 238 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AC244505.4-201ENST00000434905 287 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 SSXP5-201ENST00000443473 287 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 RPL30P9-201ENST00000465586 330 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 RPL32P34-201ENST00000486380 400 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AC093663.1-201ENST00000497190 394 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 MIR2276-201ENST00000516886 89 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 UBTFL10-201ENST00000528532 562 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AC026333.2-201ENST00000542164 106 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 DUXAP6-201ENST00000553858 601 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AP005205.1-201ENST00000563503 508 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AC020914.6-201ENST00000594327 272 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AC234772.3-201ENST00000602277 528 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 TUSC7.1-201ENST00000610969 165 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 MIR6130-201ENST00000619419 109 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AL357559.1-201ENST00000622228 274 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AC110801.1-201ENST00000623590 212 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.11□□□□□ -1.91
DDX28Q9NUL7 AC092447.10-201ENST00000620607 1652 ntBASIC3.11□□□□□ -1.91
DDX28Q9NUL7 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 ZNF807-201ENST00000328088 1707 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AC032011.1-201ENST00000611703 1549 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 DEFB108F-201ENST00000344638 222 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 RNU6-1207P-201ENST00000384343 107 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 Y_RNA.548-201ENST00000384656 105 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AL356421.1-201ENST00000403255 413 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 RPL5P18-201ENST00000406671 891 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 BMS1P22-201ENST00000414726 313 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AC068533.1-201ENST00000418542 415 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 MTCO2P17-201ENST00000424336 677 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 MTATP6P4-201ENST00000427725 675 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 SETP8-201ENST00000435341 628 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 PRDX3P3-201ENST00000447765 522 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 MTCO1P27-201ENST00000448269 226 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AC007967.1-201ENST00000455422 1159 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 SNORD105B-201ENST00000458770 79 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 DSTNP2-201ENST00000504533 515 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AC026427.2-201ENST00000506228 536 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AC074250.1-201ENST00000511117 192 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AP001804.3-201ENST00000525146 880 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 DEFB108D-201ENST00000527787 222 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 CCNG2P1-201ENST00000549521 1000 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AL354943.1-201ENST00000572103 781 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 COX6CP3-201ENST00000580869 223 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms