Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
TRIM56Q9BRZ2 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
TRIM56Q9BRZ2 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5.25□□□□□ -1.57
TRIM56Q9BRZ2 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
TRIM56Q9BRZ2 MTND5P30-201ENST00000452896 1731 ntBASIC5.25□□□□□ -1.57
TRIM56Q9BRZ2 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.25□□□□□ -1.57
TRIM56Q9BRZ2 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
TRIM56Q9BRZ2 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.25□□□□□ -1.57
TRIM56Q9BRZ2 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
TRIM56Q9BRZ2 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.25□□□□□ -1.57
TRIM56Q9BRZ2 PCAT14-202ENST00000627127 3935 ntBASIC5.25□□□□□ -1.57
TRIM56Q9BRZ2 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.25□□□□□ -1.57
TRIM56Q9BRZ2 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
TRIM56Q9BRZ2 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
TRIM56Q9BRZ2 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
TRIM56Q9BRZ2 SCARNA15-201ENST00000607520 4325 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 AL592437.2-201ENST00000421655 2434 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 STK31-205ENST00000433467 3085 ntTSL 2 BASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 RNA5SP223-201ENST00000365174 120 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 Y_RNA.556-201ENST00000384677 113 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 SNORA75.6-201ENST00000391318 127 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 RNU4-34P-201ENST00000410431 124 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 RNU4-6P-201ENST00000410804 122 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 E2F6P2-201ENST00000420708 748 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 AC093151.1-201ENST00000427711 313 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 LAMTOR5P1-201ENST00000444290 270 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 AL590399.6-201ENST00000446396 307 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 snoU13.3-201ENST00000459441 104 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 DYNLL1P5-201ENST00000467158 270 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 AC006427.1-201ENST00000514359 712 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 AC020910.3-201ENST00000603701 874 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 DUSP12P1-201ENST00000612874 516 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 AC004696.1-201ENST00000614345 607 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 AC092608.2-201ENST00000624427 218 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 AC092747.4-201ENST00000620519 1861 ntBASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.24□□□□□ -1.57
TRIM56Q9BRZ2 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 RNA5SP183-201ENST00000362452 119 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 U3.3-201ENST00000362986 216 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 SNORA74A-201ENST00000364089 198 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 Y_RNA.455-201ENST00000384230 98 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 RNU6-784P-201ENST00000384330 106 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 RNU6-1222P-201ENST00000384615 107 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 RNU6-837P-201ENST00000391056 108 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AL138785.1-201ENST00000425821 331 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 RPL23AP69-201ENST00000431134 458 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 HMGB1P30-201ENST00000492455 606 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AP002812.1-201ENST00000495378 474 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AC009812.2-201ENST00000517657 457 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AP001922.4-201ENST00000526967 290 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AC090115.3-201ENST00000553218 849 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AC006349.1-201ENST00000555526 235 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 MIR3936-201ENST00000584304 110 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AL354984.3-201ENST00000604803 325 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 ATP1B3P1-201ENST00000605365 821 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AP005432.2-201ENST00000608162 586 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AC009570.1-201ENST00000609599 745 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 FAM157A-202ENST00000615155 405 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AC118658.2-201ENST00000618697 459 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 MIR6730-201ENST00000622213 67 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 AC100778.3-201ENST00000580060 1750 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms