Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AL031121.1-201ENST00000406553 254 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 RPS3AP24-201ENST00000407896 734 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 RN7SKP220-201ENST00000410611 288 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 AL592310.1-201ENST00000414330 671 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS39Q96JC1 Z75741.2-201ENST00000417272 1167 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 AC106883.1-201ENST00000418805 562 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 AL356867.1-201ENST00000429623 299 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 AC097713.2-201ENST00000430199 356 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 AC108734.1-201ENST00000439549 399 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS39Q96JC1 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.12□□□□□ -1.91
VPS39Q96JC1 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
VPS39Q96JC1 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.12□□□□□ -1.91
VPS39Q96JC1 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
VPS39Q96JC1 AC113347.3-201ENST00000509113 148 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 RNA5SP385-201ENST00000515947 110 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 SNORA31.21-201ENST00000517180 77 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.12□□□□□ -1.91
VPS39Q96JC1 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS39Q96JC1 CCNG2P1-201ENST00000549521 1000 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS39Q96JC1 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS39Q96JC1 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC3.12□□□□□ -1.91
VPS39Q96JC1 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS39Q96JC1 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS39Q96JC1 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 AC008739.2-201ENST00000597006 317 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS39Q96JC1 AC025588.4-201ENST00000615802 908 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 AC093831.2-201ENST00000624393 3427 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 MTND5P7-201ENST00000413558 1798 ntBASIC3.12□□□□□ -1.91
VPS39Q96JC1 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
VPS39Q96JC1 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
VPS39Q96JC1 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
VPS39Q96JC1 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS39Q96JC1 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
VPS39Q96JC1 SNORA71.3-201ENST00000362582 128 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 AL136310.1-201ENST00000404926 654 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 RNA5SP274-201ENST00000410484 108 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 SDCBPP3-201ENST00000419629 891 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 AL353678.1-201ENST00000422735 741 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS39Q96JC1 EEF1A1P39-201ENST00000440791 250 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 PRDX3P3-201ENST00000447765 522 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 DUXAP8-207ENST00000456786 622 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 RNU6-420P-201ENST00000458780 107 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 snoU13.28-201ENST00000459235 104 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VPS39Q96JC1 AC108734.3-201ENST00000481241 1165 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS39Q96JC1 WBP1LP4-201ENST00000505043 344 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS39Q96JC1 MTCYBP16-201ENST00000509187 1129 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS39Q96JC1 RNU6-1225P-201ENST00000516336 65 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS39Q96JC1 AC022861.1-201ENST00000522981 663 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 OR5G4P-201ENST00000525251 760 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS39Q96JC1 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.11□□□□□ -1.91
VPS39Q96JC1 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
VPS39Q96JC1 AC125611.2-201ENST00000551907 647 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS39Q96JC1 AC010620.2-201ENST00000600135 313 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 AL050303.3-201ENST00000613704 284 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 MIR7975-201ENST00000619350 68 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 AC068880.5-201ENST00000624331 290 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 AC120349.2-201ENST00000625002 298 ntBASIC3.11□□□□□ -1.91
VPS39Q96JC1 UGP2-231ENST00000627474 264 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS39Q96JC1 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
VPS39Q96JC1 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS39Q96JC1 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS39Q96JC1 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
VPS39Q96JC1 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 AC008669.1-201ENST00000565823 2178 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 RNU5A-1-201ENST00000362698 116 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 RNA5SP72-201ENST00000364442 117 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS39Q96JC1 SNORD15B-201ENST00000384714 146 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 U3.19-201ENST00000390893 196 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 AC110754.1-201ENST00000399740 601 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 ERHP2-201ENST00000402323 299 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 SNORA11-201ENST00000408789 128 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 RNA5SP80-201ENST00000410475 111 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 AC068533.2-201ENST00000411872 306 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 MRPS36P1-201ENST00000421291 307 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS39Q96JC1 RPL7L1P10-201ENST00000427790 463 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 AL590383.1-201ENST00000428602 75 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 YME1L1P1-201ENST00000429435 297 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS39Q96JC1 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS39Q96JC1 AC009237.8-201ENST00000445492 379 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 UBBP3-201ENST00000445497 241 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 ZNF886P-201ENST00000450781 723 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS39Q96JC1 AC234775.1-201ENST00000454247 670 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 AC011979.1-201ENST00000472300 483 ntBASIC3.1□□□□□ -1.91
VPS39Q96JC1 RN7SL283P-201ENST00000489055 303 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 145.7 ms